Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NQE15_RS05515 Genome accession   NZ_CP102486
Coordinates   1094651..1095613 (+) Length   320 a.a.
NCBI ID   WP_265947292.1    Uniprot ID   -
Organism   Dechloromonas sp. A34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1089651..1100613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQE15_RS05490 - 1090552..1090809 (-) 258 WP_265947282.1 YfhL family 4Fe-4S dicluster ferredoxin -
  NQE15_RS05495 coaD 1090827..1091321 (-) 495 WP_265947284.1 pantetheine-phosphate adenylyltransferase -
  NQE15_RS05500 rsmD 1091318..1091860 (-) 543 WP_265947286.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NQE15_RS24020 - 1091857..1093184 (-) 1328 Protein_1084 M16 family metallopeptidase -
  NQE15_RS05510 - 1093184..1094536 (-) 1353 WP_265947290.1 M16 family metallopeptidase -
  NQE15_RS05515 pilA 1094651..1095613 (+) 963 WP_265947292.1 signal recognition particle-docking protein FtsY Machinery gene
  NQE15_RS05520 ftsE 1095610..1096260 (+) 651 WP_265947294.1 cell division ATP-binding protein FtsE -
  NQE15_RS05525 ftsX 1096257..1097156 (+) 900 WP_265947296.1 permease-like cell division protein FtsX -
  NQE15_RS05530 - 1097278..1098771 (+) 1494 WP_265947298.1 FAD-dependent oxidoreductase -
  NQE15_RS05535 - 1098877..1099668 (+) 792 WP_265947300.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34549.83 Da        Isoelectric Point: 8.4743

>NTDB_id=717248 NQE15_RS05515 WP_265947292.1 1094651..1095613(+) (pilA) [Dechloromonas sp. A34]
MFSFLKKSASDPKAEAPAAPSWRERLFKGLAKTRAQWGGKLKSIFSRGKVDDELLEELESLLLTSDCGIEATQHLLDELK
KAAKRDKLDTPEAIQKALADALLETLQPLEQPLDVSGHKPYVIMIAGVNGAGKTTSIGKLAKYFQDQGKSVLLAAGDTFR
AAAREQLETWGQRNNVTVIAQDNGDPAAVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIKKVAPSGPHE
TLLVLDANIGQNALQQVKAFDKAIHVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFSAKDFVDALFE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=717248 NQE15_RS05515 WP_265947292.1 1094651..1095613(+) (pilA) [Dechloromonas sp. A34]
ATGTTCAGTTTCCTGAAAAAATCCGCCTCCGATCCGAAAGCGGAAGCGCCTGCTGCGCCTTCCTGGCGCGAACGCCTGTT
CAAGGGGCTGGCCAAGACCCGCGCCCAGTGGGGGGGCAAGCTAAAGTCGATCTTCTCGCGCGGCAAGGTTGACGACGAGT
TGCTGGAAGAGCTGGAGTCGCTGCTGTTGACCAGCGATTGCGGCATCGAGGCAACCCAGCATCTGCTCGACGAGCTGAAG
AAAGCCGCCAAGCGCGACAAGCTGGATACGCCGGAAGCCATCCAGAAAGCGCTGGCCGATGCCCTGCTCGAAACCCTGCA
GCCGCTTGAACAGCCGCTCGATGTCAGCGGCCACAAGCCTTACGTGATCATGATTGCCGGGGTCAACGGGGCTGGTAAGA
CGACCTCGATCGGCAAGCTGGCCAAGTATTTCCAGGATCAGGGCAAGAGCGTACTGCTCGCCGCCGGCGATACCTTCCGT
GCCGCCGCCCGCGAGCAGCTGGAAACCTGGGGGCAACGCAACAACGTGACGGTCATTGCGCAGGACAACGGCGATCCGGC
GGCGGTGGTCTTCGACGCCATCTCGGCCGCCAAGGCACGCGGCATCGATATCGTGCTGGCCGATACCGCTGGTCGTCTGC
CGACCCAGTTGCACCTGATGGAAGAAATCGCCAAGGTGCGCCGCGTCATCAAGAAGGTCGCCCCGAGCGGTCCGCACGAA
ACGCTGCTCGTCCTCGACGCCAACATCGGCCAGAACGCGCTGCAGCAGGTCAAGGCCTTCGACAAGGCGATTCACGTTAC
CGGCCTGGTCCTGACCAAGCTCGACGGCACGGCCAAGGGCGGCGTCGTCACCGCCATCGCCCGCCAGTGCCCGAAGCCGA
TCCGCTTCATCGGGGTCGGCGAGCAGATCGACGACCTGCGTCCCTTCTCCGCCAAAGATTTCGTCGACGCCCTGTTTGAA
TGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(38-102)

SRP54-type protein, GTPase domain (SRP54)

(121-319)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

62.333

93.75

0.584