Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NUJ29_RS16135 Genome accession   NZ_CP102462
Coordinates   3418212..3419717 (+) Length   501 a.a.
NCBI ID   WP_105815128.1    Uniprot ID   A0AAP4R790
Organism   Burkholderia contaminans strain NML151013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3413212..3424717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUJ29_RS16110 (NUJ29_16110) kdsD 3414456..3415439 (+) 984 WP_039345999.1 arabinose 5-phosphate isomerase KdsD -
  NUJ29_RS16115 (NUJ29_16115) - 3415439..3415975 (+) 537 WP_039346001.1 HAD family hydrolase -
  NUJ29_RS16120 (NUJ29_16120) lptC 3415979..3416593 (+) 615 WP_105815129.1 LPS export ABC transporter periplasmic protein LptC -
  NUJ29_RS16125 (NUJ29_16125) lptA 3416614..3417279 (+) 666 WP_039346006.1 lipopolysaccharide transport periplasmic protein LptA -
  NUJ29_RS16130 (NUJ29_16130) lptB 3417276..3418052 (+) 777 WP_039346017.1 LPS export ABC transporter ATP-binding protein -
  NUJ29_RS16135 (NUJ29_16135) rpoN/rpoN1 3418212..3419717 (+) 1506 WP_105815128.1 RNA polymerase factor sigma-54 Machinery gene
  NUJ29_RS16140 (NUJ29_16140) hpf 3419876..3420235 (+) 360 WP_006477786.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NUJ29_RS16145 (NUJ29_16145) - 3420404..3420943 (+) 540 WP_011353226.1 PTS sugar transporter subunit IIA -
  NUJ29_RS16150 (NUJ29_16150) hprK 3421073..3422041 (+) 969 WP_011353227.1 HPr(Ser) kinase/phosphatase -
  NUJ29_RS16155 (NUJ29_16155) rapZ 3422117..3423025 (+) 909 WP_039346027.1 RNase adapter RapZ -
  NUJ29_RS16160 (NUJ29_16160) - 3423053..3423688 (+) 636 WP_039346030.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54785.88 Da        Isoelectric Point: 4.8740

>NTDB_id=717167 NUJ29_RS16135 WP_105815128.1 3418212..3419717(+) (rpoN/rpoN1) [Burkholderia contaminans strain NML151013]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIASPLRVAADGSLIAQTPPAQNTEPTA
TNGSSSSSDRAERDEPAGADEYDGYGSGDGNDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLTATLDEVLADLPPELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHTLIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVVP
RLRINNLYANILRNSRGDPSAGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=717167 NUJ29_RS16135 WP_105815128.1 3418212..3419717(+) (rpoN/rpoN1) [Burkholderia contaminans strain NML151013]
ATGAAAGCCAGCCTTCAACTCCGCCTGTCGCAACACCTGGCGCTGACGCCCCAGCTACAGCAGTCGATCCGGCTCCTGCA
GTTGTCGACGCTCGAATTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAACCCGCTGCTCGAGAACGACGACGAATGGA
TCGCGAGCCCGCTGCGTGTCGCTGCGGACGGATCGCTGATCGCGCAGACGCCTCCCGCGCAGAACACCGAGCCCACTGCG
ACAAACGGTAGCAGTTCGTCGAGCGATCGTGCCGAGCGCGACGAGCCGGCCGGCGCGGACGAATACGACGGTTACGGGTC
CGGCGACGGCAACGACGGCCCGCAGTGGAACCTCGACGAATTCGGCCGCTCGAGCGGCGCATCCGACGACGACGACCTCC
CGCCGCTGCAGGTACAGGAAGCGGCGACGTCGCTGCGCGACCACCTGTCCGCGCAGTTGCGCGTCACGCAGGCCGGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCCACGCTCGATGAAGTGCT
CGCCGACCTGCCGCCCGAGCTGGAGATCGACTGCGACGAACTGAACGCGGCGCTCGCGCTGCTGCACAGCTTCGATCCGG
CCGGGGTCGGTGCCCGTTCGGCATCCGAATGCCTGAAGCTGCAGTTGCTGCGCCTCGATCCGTCCCCGACACGCACGCTC
GCGCTCGAGATCGTGTCGCAGCATCTCGAACTGCTCGCCGCCCGCGACTTCACGCGGTTGCGCAAGCACCTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACACGCTGATCCGTTCGCTGGAGCCGTTCCCCGGCGCCGCATACGGCAAGGCCGAGG
CCGACTACGTCGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGATGGCTCGCGGAGCTCAATCCGGAGGTCGTGCCG
CGCCTGCGGATCAACAACCTTTACGCGAACATCCTGCGCAACAGCCGCGGCGATCCGTCGGCCGGTTCGCTCAAGCAGCA
GCTCCAGGAAGCACGCTGGCTGATCAAGAACATCCAGCAGCGTTTCGACACGATCCTGCGTGTCGCGCAGGCGATTGTCG
AGCGTCAAAAGAACTTCTTTGCGCACGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGGAAGTACATGCTGACCCCGTTCGGGACGCTTGAATTTAAGTACTT
CTTCGGATCTCACGTTTCGACCGACACCGGTGGCGCCGCTTCGTCGACAGCCATCCGAGCCCTCATCAAGCAACTGATAG
GAGCTGAAGACCCTAAATCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAAGGATTCGTGGTCGCGCGC
CGCACGGTTGCGAAGTATCGCGAAGCCCTCAAGATCCCGGCAGTGAATCTGCGCAAGTCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.379

100

0.691