Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NRE15_RS08970 Genome accession   NZ_CP102453
Coordinates   1982494..1983879 (-) Length   461 a.a.
NCBI ID   WP_313792545.1    Uniprot ID   -
Organism   Fundicoccus culcitae strain DM20194951     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1977494..1988879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRE15_RS08950 (NRE15_08970) - 1977716..1978126 (-) 411 WP_313792541.1 Mini-ribonuclease 3 -
  NRE15_RS08955 (NRE15_08975) cysS 1978123..1979556 (-) 1434 WP_313792542.1 cysteine--tRNA ligase -
  NRE15_RS08960 (NRE15_08980) gltX 1979777..1981261 (-) 1485 WP_313792543.1 glutamate--tRNA ligase -
  NRE15_RS08965 (NRE15_08985) - 1981293..1982417 (-) 1125 WP_313792544.1 PIN/TRAM domain-containing protein -
  NRE15_RS08970 (NRE15_08990) radA 1982494..1983879 (-) 1386 WP_313792545.1 DNA repair protein RadA Machinery gene
  NRE15_RS08975 (NRE15_08995) - 1983915..1984448 (-) 534 WP_313792546.1 dUTP diphosphatase -
  NRE15_RS08980 (NRE15_09000) - 1984660..1985820 (+) 1161 WP_313792547.1 ABC transporter ATP-binding protein -
  NRE15_RS08985 (NRE15_09005) - 1985911..1986780 (+) 870 WP_313792548.1 acetamidase/formamidase family protein -
  NRE15_RS08990 (NRE15_09010) - 1986843..1988225 (+) 1383 WP_313792549.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 50765.75 Da        Isoelectric Point: 6.5895

>NTDB_id=717098 NRE15_RS08970 WP_313792545.1 1982494..1983879(-) (radA) [Fundicoccus culcitae strain DM20194951]
MAKKKVMFECMACGYESPKWLGKCPNCGAWNQMEEQLVAPTVSATSPIHITTSRKKTSSHAVTLDQITLSSEERMATDFQ
EFDRVLGGGVVQGSLVLIGGDPGIGKSTLLLQVSMQLARQHTVLYVSGEESLTQIKMRASRLGTDADKFYLLSETDLSTI
ASEIQRIEPTIVVIDSIQTMNVPEHTGTAGGAGQLRVATSILMRIAKENQIAIFIVGHVTKEGNIAGPRMLEHMVDTVLY
FEGERHNRFRMLRAVKNRFGSTNELGVFEMMDIGLQEVLNPSELFLEERIVGAVGSTVVAALEGTRTILAEVQSLMTPTV
YGNAKRTASGIDYQRVSLLLAVMEKHCGLLLQNQDAFFKITGGIKLDEPAIDLAIAVSIASSYWNHPTNIDDCFIGEIGL
TGEIRRVSQIKERIKEVQKLGFKRVFIPKNNFAQLDKMESLEIIPVATIKEAIYKIFPQVG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=717098 NRE15_RS08970 WP_313792545.1 1982494..1983879(-) (radA) [Fundicoccus culcitae strain DM20194951]
TTGGCAAAAAAGAAAGTCATGTTCGAATGTATGGCCTGTGGTTATGAATCACCCAAGTGGCTAGGTAAGTGTCCCAATTG
TGGTGCCTGGAATCAAATGGAAGAACAACTTGTGGCTCCCACCGTTAGTGCAACGTCACCTATTCACATTACAACTTCGC
GAAAAAAGACCTCTAGTCATGCTGTTACCTTAGACCAGATTACCCTATCTTCAGAAGAACGAATGGCGACGGATTTTCAG
GAATTTGATCGTGTGCTAGGTGGGGGTGTCGTTCAAGGGTCATTAGTATTGATTGGGGGCGATCCTGGTATAGGGAAATC
CACCTTATTGTTACAAGTTTCCATGCAGCTTGCCAGACAACATACCGTCCTTTATGTCTCGGGCGAAGAAAGTCTCACGC
AGATTAAAATGCGTGCTAGTCGTTTAGGCACCGACGCAGATAAATTTTATTTGCTGTCGGAAACCGATCTTTCTACGATT
GCGAGTGAAATTCAACGCATTGAGCCGACTATTGTAGTGATTGACTCCATTCAAACGATGAATGTTCCTGAGCATACAGG
AACGGCTGGTGGTGCTGGACAACTGAGAGTGGCAACCAGTATTTTAATGCGGATTGCTAAAGAGAATCAGATTGCGATAT
TTATTGTTGGGCATGTGACTAAGGAAGGGAATATTGCAGGACCGCGGATGCTCGAGCATATGGTGGATACTGTTTTATAT
TTCGAAGGGGAGCGCCATAATCGTTTTCGGATGTTACGTGCGGTTAAAAATCGTTTTGGTTCAACGAATGAGTTGGGTGT
TTTTGAAATGATGGATATTGGACTGCAAGAAGTGTTAAATCCTTCAGAATTGTTTTTAGAGGAACGGATTGTCGGTGCAG
TAGGTTCAACTGTGGTGGCTGCTTTAGAAGGAACACGAACGATTTTGGCTGAGGTACAGTCACTAATGACGCCAACGGTT
TATGGGAATGCTAAAAGGACAGCTAGTGGGATTGACTATCAACGGGTGTCTTTACTTTTAGCTGTTATGGAGAAGCATTG
TGGCCTCTTGTTACAAAATCAAGATGCTTTTTTTAAAATTACTGGTGGAATTAAATTAGATGAACCTGCCATTGATTTAG
CCATTGCGGTCAGTATCGCCTCTAGTTATTGGAATCATCCAACGAATATTGATGATTGTTTTATTGGTGAAATTGGCTTA
ACGGGGGAAATTAGACGGGTCAGTCAAATCAAAGAACGGATAAAGGAAGTTCAAAAATTAGGTTTTAAACGGGTATTTAT
TCCCAAAAATAATTTTGCCCAATTAGATAAAATGGAATCCTTGGAAATTATCCCAGTGGCAACGATAAAAGAAGCCATCT
ACAAAATATTTCCACAAGTTGGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-223)

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

59.868

98.915

0.592
  radA Streptococcus pneumoniae Rx1

59.081

99.132

0.586
  radA Streptococcus pneumoniae D39

59.081

99.132

0.586
  radA Streptococcus mitis NCTC 12261

59.081

99.132

0.586
  radA Streptococcus pneumoniae TIGR4

59.081

99.132

0.586
  radA Streptococcus mitis SK321

59.081

99.132

0.586
  radA Streptococcus pneumoniae R6

59.081

99.132

0.586