Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   G314FT_RS04780 Genome accession   NZ_CP102451
Coordinates   926220..928034 (+) Length   604 a.a.
NCBI ID   WP_257702313.1    Uniprot ID   -
Organism   Vagococcus luciliae strain G314F     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 921220..933034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G314FT_RS04765 (G314FT_09530) yjeM 922108..923607 (-) 1500 WP_257702309.1 glutamate/gamma-aminobutyrate family transporter YjeM -
  G314FT_RS04770 (G314FT_09540) queG 923796..924947 (-) 1152 WP_257702310.1 tRNA epoxyqueuosine(34) reductase QueG -
  G314FT_RS04775 (G314FT_09550) - 925050..926195 (+) 1146 WP_257702311.1 competence protein CoiA family protein -
  G314FT_RS04780 (G314FT_09560) pepF 926220..928034 (+) 1815 WP_257702313.1 oligoendopeptidase F Regulator
  G314FT_RS04785 (G314FT_09570) - 928073..928672 (-) 600 WP_257702314.1 DsbA family protein -
  G314FT_RS04790 (G314FT_09580) - 928777..929358 (-) 582 WP_257702315.1 CYTH domain-containing protein -
  G314FT_RS04795 (G314FT_09590) - 929493..930167 (+) 675 WP_257702316.1 GTP pyrophosphokinase family protein -
  G314FT_RS04800 (G314FT_09600) - 930157..930975 (+) 819 WP_257702513.1 NAD kinase -
  G314FT_RS04805 (G314FT_09610) - 930972..931856 (+) 885 WP_257702317.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 68996.99 Da        Isoelectric Point: 4.7385

>NTDB_id=717064 G314FT_RS04780 WP_257702313.1 926220..928034(+) (pepF) [Vagococcus luciliae strain G314F]
MSETKQLPNRSELPEELTWDLTPIFASDDAFNDALESLTLDLEKASEYQGTLKNGAKAFLSAIEYVLSIHRTTEKIYVYS
HLKNDQDTSNATYQGVYAKASTIAAKAGEAVSWFGPEVLTLSDETIEAYFKEESGLEIYRHFINQITADRAHTLSEKEEA
LLAGASEIFSASSHTFSILNNADLEFPIVTDEEGEKVQLSSGMYGQLMESTNREVRKEAFEGLYKVYKQFRNTFASTLSS
HVKKHNFNAQIRNYSSAREASLSANHIPESVYDTLLDVVHKNLPLLHRYVALRKKLLNVSELHMYDMYTPILGDAPIRYT
YDEAKLKSLEGLSPLGEEYLEIVQEAYGDRWIDVVENKGKRSGAYSSGSYDTKPYILLNWHESLNHLFTLVHEMGHSVHS
YYTRKNQPYVYGDYSIFLAEIASTTNENLLTDYLLKTEKDPKVKAFILNHYLDGVKGTIFRQTQFAEFEHFIHTEDAKGT
PLTSDYLSEYYADLNAKYYGDSVERDPEIAYEWSRIPHFYYNYYVYQYATGFSAATALADKIIRKEDGALENYLTFLKSG
SSDYPIDVMKRAGVDMTQSAYIEETMKVFEARLDELETLIDSFE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=717064 G314FT_RS04780 WP_257702313.1 926220..928034(+) (pepF) [Vagococcus luciliae strain G314F]
ATGAGTGAAACAAAACAATTACCAAATCGTTCGGAACTACCAGAGGAATTAACATGGGATTTAACACCTATTTTTGCATC
AGATGATGCCTTTAACGATGCATTAGAGTCATTAACATTAGATTTAGAAAAAGCAAGCGAGTATCAAGGAACATTAAAAA
ATGGTGCAAAGGCTTTTCTATCAGCGATTGAATATGTCTTATCTATTCATCGTACGACAGAAAAAATTTATGTGTACTCA
CATTTAAAAAATGACCAAGATACAAGCAATGCGACTTACCAAGGAGTGTATGCCAAAGCTAGCACGATTGCAGCTAAAGC
AGGGGAGGCTGTTTCATGGTTTGGTCCAGAAGTTTTAACATTATCAGATGAGACCATAGAGGCATATTTTAAAGAAGAAT
CTGGTTTAGAAATCTATCGTCATTTTATTAATCAAATTACAGCAGACAGAGCACATACTTTATCTGAAAAAGAAGAAGCG
TTATTAGCTGGGGCAAGTGAGATATTCTCAGCATCAAGTCATACTTTTTCTATACTAAATAATGCTGATTTAGAATTTCC
AATTGTGACAGATGAAGAAGGTGAAAAAGTTCAATTATCTTCAGGAATGTATGGTCAATTAATGGAAAGTACTAATCGCG
AAGTCCGTAAAGAAGCGTTTGAAGGATTGTACAAAGTCTATAAACAATTTAGAAATACATTTGCCAGTACGTTATCTTCT
CACGTGAAAAAACATAATTTCAATGCTCAAATTAGAAATTACAGTTCTGCCCGTGAAGCATCTTTAAGTGCTAATCATAT
TCCAGAATCAGTCTATGATACATTGTTAGATGTGGTACATAAAAATTTACCATTACTACATCGTTATGTTGCGTTACGTA
AAAAATTATTAAATGTTAGTGAGTTGCATATGTATGATATGTATACACCAATATTAGGTGATGCCCCAATTCGTTACACT
TATGATGAGGCAAAATTAAAATCACTTGAAGGATTGTCTCCATTAGGTGAAGAATACTTAGAAATCGTTCAAGAAGCGTA
TGGTGACCGTTGGATTGATGTGGTTGAAAACAAAGGTAAACGCAGTGGCGCTTATTCTTCAGGAAGTTATGACACAAAAC
CTTATATCTTATTAAACTGGCATGAAAGCTTAAATCATTTATTTACGCTAGTTCATGAAATGGGACACAGCGTGCATAGT
TACTATACAAGAAAAAATCAGCCTTATGTGTATGGCGATTATTCAATCTTTTTAGCAGAAATTGCGTCAACAACTAATGA
AAACTTACTAACAGATTATTTGTTAAAAACAGAAAAAGATCCGAAAGTTAAGGCCTTTATTTTAAATCATTATTTGGATG
GTGTAAAAGGCACAATCTTTAGACAAACGCAATTTGCTGAATTTGAACATTTTATTCACACAGAAGATGCGAAAGGAACA
CCATTAACAAGTGATTATTTAAGTGAGTACTATGCTGATTTAAATGCGAAATACTATGGTGATTCGGTAGAACGCGATCC
AGAAATCGCGTATGAATGGAGTCGTATTCCTCATTTCTACTATAATTATTATGTTTATCAATATGCAACAGGTTTTTCTG
CTGCAACTGCTTTAGCGGATAAAATTATCCGTAAAGAAGATGGGGCTCTGGAAAATTACTTAACATTCTTGAAATCAGGA
AGTAGTGATTATCCTATTGATGTCATGAAACGCGCGGGAGTAGACATGACGCAATCTGCCTATATTGAAGAAACAATGAA
AGTCTTTGAAGCTCGTTTAGATGAGTTAGAAACGTTAATTGATTCATTTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.637

98.179

0.536