Detailed information NTG0716985

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NR793_RS22365
• Genome accession: NZ_CP102434
• Coordinates: 3006663..3007670 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain RMDVP1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3001663..3012670

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NR793_RS22345 (NR793_22375)	rplC	3002197..3002826 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
NR793_RS22350 (NR793_22380)	rpsJ	3002841..3003152 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
NR793_RS22355 (NR793_22385)	rpmE	3003610..3003831 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
NR793_RS22360 (NR793_22390)	priA	3004126..3006330 (+)	2205	WP_025637279.1	primosomal protein N'	-
NR793_RS22365 (NR793_22395)	cytR	3006663..3007670 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
NR793_RS22370 (NR793_22400)	ftsN	3007847..3008392 (+)	546	WP_005489623.1	cell division protein FtsN	-
NR793_RS22375 (NR793_22405)	hslV	3008556..3009107 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
NR793_RS22380 (NR793_22410)	hslU	3009131..3010462 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
NR793_RS22385 (NR793_22415)	-	3010886..3011110 (-)	225	WP_005489715.1	hypothetical protein	-
NR793_RS22390 (NR793_22420)	-	3011270..3011419 (-)	150	WP_005489496.1	AlpA family phage regulatory protein	-
NR793_RS22395 (NR793_22425)	radC	3011590..3012063 (+)	474	WP_005489555.1	DNA repair protein RadC	-
NR793_RS22400 (NR793_22430)	-	3012060..3012491 (+)	432	WP_005489473.1	DUF2787 family protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=716985 NR793_RS22365 WP_005481416.1 3006663..3007670(+) (cytR) [Vibrio parahaemolyticus strain RMDVP1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=716985 NR793_RS22365 WP_005481416.1 3006663..3007670(+) (cytR) [Vibrio parahaemolyticus strain RMDVP1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGACCAGATAC
AGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGTGTTCCACAAGATCT
GTCGGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904