Detailed information NTG0716963

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NR793_RS11165
• Genome accession: NZ_CP102434
• Coordinates: 594092..595081 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain RMDVP1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 589092..600081

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NR793_RS11130 (NR793_11155)	ftsB	589100..589381 (+)	282	WP_005455577.1	cell division protein FtsB	-
NR793_RS11135 (NR793_11160)	ispD	589383..590087 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NR793_RS11140 (NR793_11165)	ispF	590105..590581 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NR793_RS11145 (NR793_11170)	truD	590628..591671 (+)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
NR793_RS11150 (NR793_11175)	surE	591671..592447 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
NR793_RS11155 (NR793_11180)	-	592447..593073 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
NR793_RS11160 (NR793_11185)	-	593088..594011 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
NR793_RS11165 (NR793_11190)	rpoS	594092..595081 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
NR793_RS11170 (NR793_11195)	mutS	595160..597721 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
NR793_RS11175 (NR793_11200)	pncC	597806..598288 (+)	483	WP_005478554.1	nicotinamide-nucleotide amidase	-
NR793_RS11180 (NR793_11205)	recA	598489..599532 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=716963 NR793_RS11165 WP_005478537.1 594092..595081(+) (rpoS) [Vibrio parahaemolyticus strain RMDVP1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=716963 NR793_RS11165 WP_005478537.1 594092..595081(+) (rpoS) [Vibrio parahaemolyticus strain RMDVP1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851