Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NR793_RS09980 Genome accession   NZ_CP102434
Coordinates   352580..353158 (+) Length   192 a.a.
NCBI ID   WP_005480484.1    Uniprot ID   Q87L63
Organism   Vibrio parahaemolyticus strain RMDVP1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347580..358158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR793_RS09965 (NR793_09990) oxyR 347903..348811 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  NR793_RS09970 (NR793_09995) - 348867..351437 (-) 2571 WP_005480476.1 PBP1A family penicillin-binding protein -
  NR793_RS09975 (NR793_10000) pilM 351580..352596 (+) 1017 WP_005480475.1 type IV pilus assembly protein PilM Machinery gene
  NR793_RS09980 (NR793_10005) pilN 352580..353158 (+) 579 WP_005480484.1 PilN domain-containing protein Machinery gene
  NR793_RS09985 (NR793_10010) pilO 353151..353744 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  NR793_RS09990 (NR793_10015) pilP 353734..354249 (+) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  NR793_RS09995 (NR793_10020) pilQ 354281..356023 (+) 1743 WP_024699327.1 type IV pilus secretin PilQ family protein Machinery gene
  NR793_RS10000 (NR793_10025) aroK 356212..356730 (+) 519 WP_005381319.1 shikimate kinase AroK -
  NR793_RS10005 (NR793_10030) aroB 356762..357862 (+) 1101 WP_005480443.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.91 Da        Isoelectric Point: 6.6554

>NTDB_id=716954 NR793_RS09980 WP_005480484.1 352580..353158(+) (pilN) [Vibrio parahaemolyticus strain RMDVP1]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=716954 NR793_RS09980 WP_005480484.1 352580..353158(+) (pilN) [Vibrio parahaemolyticus strain RMDVP1]
GTGCTTTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTCGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87L63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594