Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NRG74_RS21785 Genome accession   NZ_CP102428
Coordinates   4703844..4705061 (+) Length   405 a.a.
NCBI ID   WP_027600839.1    Uniprot ID   A0A3D9F4L0
Organism   Pseudomonas oryzihabitans strain YY7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4698844..4710061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG74_RS21765 (NRG74_21765) - 4700180..4701178 (+) 999 WP_257705294.1 SDR family oxidoreductase -
  NRG74_RS21770 (NRG74_21770) pilA/pilAI 4701266..4701724 (-) 459 WP_307773990.1 pilin Machinery gene
  NRG74_RS21780 (NRG74_21780) pilB 4701937..4703631 (+) 1695 WP_257705296.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NRG74_RS21785 (NRG74_21785) pilC 4703844..4705061 (+) 1218 WP_027600839.1 type II secretion system F family protein Machinery gene
  NRG74_RS21790 (NRG74_21790) pilD 4705061..4705933 (+) 873 WP_257705297.1 A24 family peptidase Machinery gene
  NRG74_RS21795 (NRG74_21795) coaE 4705930..4706541 (+) 612 WP_017640819.1 dephospho-CoA kinase -
  NRG74_RS21800 (NRG74_21800) yacG 4706538..4706735 (+) 198 WP_257705298.1 DNA gyrase inhibitor YacG -
  NRG74_RS21805 (NRG74_21805) - 4706891..4707388 (-) 498 WP_173149049.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44190.10 Da        Isoelectric Point: 9.8100

>NTDB_id=716944 NRG74_RS21785 WP_027600839.1 4703844..4705061(+) (pilC) [Pseudomonas oryzihabitans strain YY7]
MADKAIKMGSFTWEGTDRKGTKVKGEMTGLNPALIKAQLRKQGINPTRVRKKSVSLFGKGKKIKPMDIALFTRQLATMMS
AGVPLLQAFDIIGEGFDNPNMRKMVDDIKQDVAAGNSLANSLRKQPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKKKIKKAMTYPAAVIVVAVIVSAILLIKVVPQFQSVFEGFGAQLPAFTLMVIAISEVLQEWWLLVLGGLFVLAFVLR
HFYKKSEKFRDAVDRGLLKIPLIGSILYKSAIARYARTLATTFAAGVPLVDALDSVAGATGNVVFRNAVEKIKGDVSTGM
QLNFSMRTTGVFSSMAIQMTAIGEESGSLDEMLSKVATFYEDEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=716944 NRG74_RS21785 WP_027600839.1 4703844..4705061(+) (pilC) [Pseudomonas oryzihabitans strain YY7]
ATGGCCGATAAAGCTATCAAGATGGGCAGCTTCACCTGGGAGGGGACCGATCGCAAAGGGACCAAGGTGAAGGGTGAGAT
GACGGGCTTGAATCCTGCGTTGATCAAGGCGCAGTTGCGTAAGCAGGGGATCAACCCGACCCGGGTGCGCAAGAAATCGG
TGTCGCTATTCGGCAAGGGCAAGAAGATCAAGCCCATGGACATCGCCCTGTTCACCCGACAGCTGGCGACCATGATGAGC
GCGGGTGTGCCCCTGCTGCAGGCCTTCGACATCATTGGCGAGGGCTTCGACAATCCCAACATGCGCAAGATGGTGGACGA
CATCAAGCAGGATGTCGCCGCGGGTAACAGCCTGGCCAACTCTCTGCGCAAGCAACCCCAATACTTCGACGATCTCTATT
GCAACCTGGTGGACGCTGGCGAGCAATCCGGTGCCCTGGAGACCTTGCTGGATCGAGTGGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAAAAGAAGATCAAGAAGGCCATGACCTATCCTGCGGCGGTGATTGTCGTCGCGGTAATCGTCTCGGCCAT
TCTGTTGATCAAGGTAGTGCCTCAGTTCCAGTCGGTGTTCGAAGGCTTCGGTGCTCAGTTGCCGGCGTTCACCCTTATGG
TCATCGCCATTTCCGAGGTCTTGCAGGAATGGTGGTTGTTGGTACTGGGCGGGCTCTTCGTATTGGCGTTCGTCCTGCGG
CACTTCTATAAGAAATCGGAGAAATTCCGCGACGCGGTCGACCGTGGATTACTGAAGATCCCATTGATCGGCTCCATTCT
CTATAAATCGGCCATTGCCCGTTATGCTCGCACGCTGGCCACCACCTTCGCGGCCGGTGTGCCGCTGGTGGATGCTCTCG
ATTCGGTGGCGGGTGCGACCGGCAACGTGGTGTTCCGCAATGCCGTGGAGAAGATCAAGGGCGATGTCTCCACCGGCATG
CAGCTCAACTTCTCCATGCGTACCACCGGGGTGTTCTCGTCCATGGCCATCCAGATGACGGCGATCGGCGAGGAGTCCGG
CTCCCTGGACGAGATGCTGTCCAAGGTCGCGACCTTCTATGAAGACGAGGTCGACAACATGGTCGACAACCTCACCACCC
TGATGGAGCCGATGATCATGGCGGTTCTGGGGGTCCTGGTGGGTGGTCTGATCATTGCCATGTACCTGCCCATCTTCCAG
CTCGGCTCGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3D9F4L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

79.259

100

0.793
  pilC Acinetobacter baylyi ADP1

59.314

100

0.598
  pilC Acinetobacter baumannii D1279779

59.406

99.753

0.593
  pilC Legionella pneumophila strain ERS1305867

54.66

98.025

0.536
  pilG Neisseria meningitidis 44/76-A

45.32

100

0.454
  pilG Neisseria gonorrhoeae MS11

45.074

100

0.452
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.196

100

0.405
  pilC Thermus thermophilus HB27

37.965

99.506

0.378