Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NRG74_RS21660 Genome accession   NZ_CP102428
Coordinates   4678105..4679679 (-) Length   524 a.a.
NCBI ID   WP_017640840.1    Uniprot ID   A0A178LFV9
Organism   Pseudomonas oryzihabitans strain YY7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4673105..4684679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG74_RS21635 (NRG74_21635) pilV 4673986..4674459 (-) 474 WP_184290411.1 type IV pilus modification protein PilV -
  NRG74_RS21640 (NRG74_21640) - 4674456..4674974 (-) 519 WP_257705283.1 GspH/FimT family pseudopilin -
  NRG74_RS21645 (NRG74_21645) - 4675038..4675562 (-) 525 WP_257705284.1 GspH/FimT family pseudopilin -
  NRG74_RS21650 (NRG74_21650) thiO 4675658..4676761 (+) 1104 WP_257705285.1 glycine oxidase ThiO -
  NRG74_RS21655 (NRG74_21655) pilR 4676762..4678102 (-) 1341 WP_257705286.1 sigma-54 dependent transcriptional regulator Regulator
  NRG74_RS21660 (NRG74_21660) pilS 4678105..4679679 (-) 1575 WP_017640840.1 PAS domain-containing sensor histidine kinase Regulator
  NRG74_RS21665 (NRG74_21665) - 4679663..4679911 (-) 249 WP_068383507.1 PP0621 family protein -
  NRG74_RS21670 (NRG74_21670) - 4680045..4681667 (+) 1623 WP_257705287.1 NAD+ synthase -
  NRG74_RS21675 (NRG74_21675) - 4681778..4682803 (-) 1026 WP_007160812.1 outer membrane protein assembly factor BamD -
  NRG74_RS21680 (NRG74_21680) rluD 4682992..4683951 (+) 960 WP_017640836.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NRG74_RS21685 (NRG74_21685) pgeF 4683948..4684679 (+) 732 WP_068383503.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 524 a.a.        Molecular weight: 57369.11 Da        Isoelectric Point: 8.1876

>NTDB_id=716941 NRG74_RS21660 WP_017640840.1 4678105..4679679(-) (pilS) [Pseudomonas oryzihabitans strain YY7]
MSTATDPGILRADAVLRLYHLYRIVIGLALVVLISSDLDQHWLRTVDGLLFRQASWAYLATNVVLAVGHRLLRGRAFALA
LIDILALGGLFFLAGGIASGMGSLLVVTVGVSNVLIRGRRGLLIAALAAIALLLATGYLDLRRGDSGSGYVQAAGLGTLC
FATALLVQGLVRRLLDSQALAETRATAVAELEALNALILERMRTGILVFDAEYQVLLANPAARRLLGVDDEATITPLTLG
LAQRLEEWERNPSIRPTPWRAHANGPLLQPSFARLQQGEGERVLTFLEDVSRIAQQAQQLKLASLGRLTAGIAHEIRNPL
GAISHAAQLLQESEELTTPDRRLAQIIQDQSRRMNRVVENVLQLSRRRQAAPQLIDLRYWAHRFAGELRPTLPAGQTLHV
KTEAGTLQTHMDPHQLGQILTNLVQNGLRYSCQKHGTGQVWLSTYRDPESDLPILEVVDDGPGVAAEQLDHLFEPFFTTE
NKGTGLGLYISRELCESNQARLGYHPLANGSCFRITFAHPRTMS

Nucleotide


Download         Length: 1575 bp        

>NTDB_id=716941 NRG74_RS21660 WP_017640840.1 4678105..4679679(-) (pilS) [Pseudomonas oryzihabitans strain YY7]
ATGAGCACCGCAACTGATCCAGGCATCCTGAGAGCCGACGCGGTCCTGCGGCTCTATCATCTCTATCGCATCGTCATCGG
TCTGGCGCTGGTGGTGCTGATTTCCAGCGATCTGGATCAGCACTGGCTGCGCACCGTCGACGGCCTGCTGTTCCGTCAGG
CCAGCTGGGCCTATCTGGCCACCAACGTAGTGCTCGCGGTCGGCCATCGGCTGCTGCGCGGTCGCGCCTTCGCCCTGGCA
CTGATCGATATCCTCGCCCTAGGCGGCCTGTTCTTCCTGGCCGGCGGCATCGCCAGCGGCATGGGCAGTCTGCTGGTGGT
GACCGTCGGGGTCTCCAACGTCCTGATCCGCGGACGCCGCGGCCTGCTGATCGCCGCCCTGGCCGCCATCGCCCTGCTGC
TGGCGACCGGCTACCTGGACCTACGCCGTGGCGACAGCGGCAGCGGCTATGTGCAGGCGGCAGGTCTGGGCACTCTTTGT
TTCGCCACGGCACTGCTGGTACAGGGCCTGGTCCGGCGGCTGCTGGACAGCCAGGCCCTGGCCGAAACCCGCGCCACTGC
AGTGGCCGAACTGGAAGCCCTCAATGCCCTGATCCTCGAACGCATGCGTACCGGCATCCTGGTGTTCGATGCCGAGTACC
AGGTGCTGCTGGCCAATCCAGCAGCCCGGCGCCTGCTCGGGGTGGACGACGAGGCCACCATCACGCCCCTGACCCTGGGC
CTCGCCCAGCGGCTGGAGGAATGGGAGCGCAATCCCAGCATCCGTCCCACGCCCTGGCGCGCCCATGCCAACGGCCCGCT
GCTGCAACCCAGCTTCGCCCGGCTGCAGCAAGGCGAGGGCGAACGGGTACTCACCTTTCTCGAAGACGTCTCGCGCATCG
CGCAGCAGGCCCAGCAACTCAAGCTCGCCTCCCTTGGTCGTCTCACCGCCGGCATCGCCCACGAGATCCGCAACCCGCTG
GGGGCCATCAGTCACGCCGCGCAACTGCTGCAGGAATCCGAAGAACTGACCACACCGGATCGGCGCCTGGCGCAGATCAT
CCAGGACCAGTCACGACGAATGAATCGGGTGGTGGAAAACGTTCTGCAGCTGTCGCGCCGACGCCAGGCCGCGCCGCAGC
TGATCGATCTGCGCTATTGGGCGCACCGCTTCGCCGGGGAGTTGCGCCCTACCCTGCCCGCCGGCCAGACGCTGCACGTC
AAGACCGAAGCCGGTACCCTGCAGACCCACATGGACCCCCACCAGCTGGGCCAGATCCTGACCAACCTGGTACAGAACGG
CCTGCGCTACAGCTGCCAGAAACACGGCACCGGCCAGGTCTGGCTCAGCACCTACCGCGACCCGGAAAGCGATCTGCCCA
TCCTCGAGGTGGTCGATGACGGCCCAGGCGTCGCCGCCGAACAACTCGACCACCTGTTCGAACCCTTCTTCACCACCGAG
AACAAGGGGACCGGGCTGGGCCTGTACATCTCCCGTGAGCTTTGCGAGAGCAACCAAGCCAGACTTGGCTATCATCCTTT
GGCGAACGGCAGCTGTTTTCGCATCACCTTCGCCCATCCCCGCACAATGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(412-517)

His Kinase A (phospho-acceptor) domain (HisKA)

(304-368)

PAS domain (PAS_8)

(198-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A178LFV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.735

98.664

0.599