Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NP825_RS02225 Genome accession   NZ_CP102384
Coordinates   462691..464052 (+) Length   453 a.a.
NCBI ID   WP_257548040.1    Uniprot ID   -
Organism   Sphingopyxis sp. DBS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 457691..469052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP825_RS02205 - 457825..459324 (+) 1500 WP_257548036.1 aldehyde dehydrogenase family protein -
  NP825_RS02210 - 459355..460854 (-) 1500 WP_257548037.1 acetyl-CoA acetyltransferase -
  NP825_RS02215 - 460856..461659 (-) 804 WP_257548038.1 enoyl-CoA hydratase-related protein -
  NP825_RS02220 fsa 461852..462502 (-) 651 WP_257548039.1 fructose-6-phosphate aldolase -
  NP825_RS02225 radA 462691..464052 (+) 1362 WP_257548040.1 DNA repair protein RadA Machinery gene
  NP825_RS02230 - 464194..464754 (+) 561 WP_257548041.1 CvpA family protein -
  NP825_RS02235 - 464751..465179 (+) 429 WP_257548042.1 iron-sulfur cluster assembly scaffold protein -
  NP825_RS02240 - 465176..467053 (+) 1878 WP_257548043.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  NP825_RS02245 aroB 467455..468552 (-) 1098 WP_257548045.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 47437.28 Da        Isoelectric Point: 6.1807

>NTDB_id=716768 NP825_RS02225 WP_257548040.1 462691..464052(+) (radA) [Sphingopyxis sp. DBS4]
MAKAKRQYVCQNCGAVSYRWQGQCADCGEWNTLVEEAAETVFSAKHDLSRGGRTLALETLDAHSVMPDRMLCGIAEFDRA
LGGGFVAGSATLIGGDPGIGKSTLLLQAAGRLAKAGKSVVYISGEEAAAQVRLRAQRLGLGDAPVALASATSVRDILATL
DSRTADFVVIDSIQTMHSDLIDSAPGTVSQVRASAQELIRYAKDSGAAIVLVGHVTKDGTIAGPRVLEHMVDTVLAFEGE
RSHLYRILRAVKNRFGGTDEIGVFAMGEEGLGEVANPSSLFLTDRGRDVPGSVVFPALEGTRPVLVEVQALTVRLASGAT
PRRAVVGWDSGRLAMVLAVLEARCGLQMGAAEVYLNVAGGYRLTDPAADLAVAAALISAFSERPVPADAIVFGELSLSGE
IRPVAHDALRLREAAKLGFSSGWGPKGMKGVNGIGVTGFARLGELVDLMLGRD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=716768 NP825_RS02225 WP_257548040.1 462691..464052(+) (radA) [Sphingopyxis sp. DBS4]
ATGGCCAAAGCGAAACGCCAATATGTCTGCCAGAATTGCGGCGCCGTCAGCTATCGCTGGCAGGGGCAATGCGCCGATTG
TGGCGAGTGGAACACGCTGGTCGAAGAGGCGGCGGAAACCGTCTTTTCGGCCAAGCACGACCTGTCGCGCGGCGGGCGGA
CGCTGGCGCTCGAAACGCTGGACGCGCACAGCGTCATGCCCGACCGGATGCTCTGCGGTATCGCCGAGTTCGACCGGGCG
CTGGGCGGCGGCTTCGTCGCGGGGTCGGCGACGCTGATCGGCGGCGATCCGGGGATCGGCAAATCGACGCTTCTCTTGCA
AGCGGCGGGGCGGCTCGCGAAGGCGGGCAAGTCGGTCGTCTATATCAGCGGCGAGGAGGCCGCGGCGCAGGTGCGGCTGC
GCGCGCAGCGGCTGGGGCTCGGCGATGCGCCGGTGGCGCTGGCGAGCGCGACGTCGGTGCGCGATATCCTCGCGACGCTT
GATAGTCGCACCGCCGATTTCGTCGTCATCGATTCGATCCAGACGATGCACAGCGACCTGATCGACAGCGCCCCCGGGAC
CGTCAGCCAGGTCCGCGCAAGCGCGCAGGAGTTGATCCGCTACGCCAAGGACAGCGGCGCTGCGATCGTGCTCGTCGGGC
ATGTGACGAAGGACGGGACGATCGCCGGGCCGCGCGTGCTCGAACATATGGTCGACACGGTACTGGCGTTCGAGGGCGAG
CGCAGCCATCTTTATCGCATCCTCCGCGCGGTCAAGAACCGCTTCGGCGGCACCGACGAGATCGGGGTGTTCGCGATGGG
CGAGGAAGGGCTCGGCGAAGTCGCCAACCCGTCGAGCCTGTTCCTGACCGATCGCGGCCGCGACGTACCGGGATCGGTGG
TCTTCCCTGCCTTGGAAGGCACAAGGCCGGTGCTGGTCGAGGTGCAGGCGCTGACCGTCCGCCTCGCCAGCGGCGCGACG
CCGCGCCGCGCGGTTGTCGGCTGGGACAGCGGGCGGCTCGCGATGGTGCTCGCGGTGCTCGAAGCGCGTTGCGGGCTCCA
GATGGGTGCGGCCGAAGTCTATCTCAATGTCGCGGGCGGCTATCGCCTCACCGATCCCGCTGCCGACCTCGCGGTCGCGG
CGGCGCTGATTTCGGCGTTCAGCGAGCGGCCGGTGCCTGCCGATGCGATCGTTTTCGGCGAGTTGTCGCTGTCGGGCGAA
ATCCGCCCCGTCGCCCATGACGCGCTGCGCCTCCGCGAGGCGGCGAAGCTCGGCTTTTCGAGTGGTTGGGGGCCAAAGGG
CATGAAAGGCGTGAACGGGATCGGCGTCACCGGCTTTGCCCGATTGGGCGAACTGGTTGATCTGATGCTCGGGCGTGACT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-219)

Subunit ChlI of Mg-chelatase (ChlI)

(342-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.084

100

0.481
  radA Streptococcus pneumoniae Rx1

47.297

98.013

0.464
  radA Streptococcus pneumoniae D39

47.297

98.013

0.464
  radA Streptococcus pneumoniae TIGR4

47.297

98.013

0.464
  radA Streptococcus pneumoniae R6

47.297

98.013

0.464
  radA Streptococcus mitis NCTC 12261

47.072

98.013

0.461
  radA Streptococcus mitis SK321

48.009

94.26

0.453