Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NP781_RS21915 Genome accession   NZ_CP102383
Coordinates   4154441..4155817 (-) Length   458 a.a.
NCBI ID   WP_257520822.1    Uniprot ID   -
Organism   Lysinibacillus sp. FN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4149441..4160817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP781_RS21895 (NP781_21895) ispF 4150489..4150965 (-) 477 WP_004233581.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  NP781_RS21900 (NP781_21900) epsC 4151107..4152048 (-) 942 WP_004233580.1 serine O-acetyltransferase EpsC -
  NP781_RS21905 (NP781_21905) ispD 4152363..4153058 (-) 696 WP_257520820.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NP781_RS21910 (NP781_21910) - 4153070..4154155 (-) 1086 WP_257520821.1 PIN/TRAM domain-containing protein -
  NP781_RS21915 (NP781_21915) radA 4154441..4155817 (-) 1377 WP_257520822.1 DNA repair protein RadA Machinery gene
  NP781_RS21920 (NP781_21920) - 4155909..4158353 (-) 2445 WP_257520823.1 ATP-dependent Clp protease ATP-binding subunit -
  NP781_RS21925 (NP781_21925) - 4158343..4159452 (-) 1110 WP_131521806.1 protein arginine kinase -
  NP781_RS21930 (NP781_21930) - 4159449..4159991 (-) 543 WP_004233574.1 UvrB/UvrC motif-containing protein -
  NP781_RS21935 (NP781_21935) - 4160005..4160475 (-) 471 WP_004233573.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50186.07 Da        Isoelectric Point: 7.9293

>NTDB_id=716756 NP781_RS21915 WP_257520822.1 4154441..4155817(-) (radA) [Lysinibacillus sp. FN11]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEVEMVAKGPRGAFQHSATVTQKAIPIIQVEATEESRVATEMGELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDKVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVRATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPSSNIGGWEFPQGIEIVGVETIKDALNACFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=716756 NP781_RS21915 WP_257520822.1 4154441..4155817(-) (radA) [Lysinibacillus sp. FN11]
TTGGCAAAGAAAAAAACGAAATTTGTATGTTCAGGCTGTGGCTATGAGTCTGCTAAATGGATGGGAAGATGCCCTGGGTG
TGGTGAATGGAATAAAATGGTGGAAGAAGTAGAGATGGTTGCAAAAGGTCCACGAGGAGCATTTCAACATTCTGCTACAG
TCACACAAAAGGCAATCCCGATTATCCAAGTGGAAGCTACTGAAGAATCGCGTGTAGCAACAGAAATGGGCGAACTCAAT
CGTGTATTAGGCGGGGGCATTGTACCTGGTTCTCTAGTATTAATTGGGGGCGATCCTGGAATAGGGAAATCAACATTACT
ATTACAGGTTTCCGCATTACTCTCGAATAAAGGGCATCGCGTACTTTATATTTCTGGAGAGGAATCTATTCGTCAAACGA
AATTACGAGCAGAGCGTTTAGGAGTGATTTCTCAAGAGCTTTACATATACTCCGAAACAAACCTAGAGTTTTTAAACCAA
ACCATTGATAAAGTACAGCCTAAATTTGTTATTGTCGATTCCATACAAACGGTCTTTCATCCAGAAGTAACAAGCGCCCC
TGGTAGTGTCTCACAGGTTCGTGAATGTACAGCTGAGCTGATGCGAATCGCTAAAACCAAAGGCATTGCTATTTTTCTAG
TAGGGCATGTAACAAAAGAGGGGCAAATTGCTGGGCCACGTATTTTAGAGCATATGGTGGATACTGTATTGTACTTTGAA
GGGGAAAGACATCATAATCATCGTATTTTACGAAGCCAAAAAAACCGCTTCGGATCTACAAATGAAATTGCTATATTTGA
AATGCTTCAAGGAGGGTTAAAGGAAGTTCTAAACCCTTCGGAGTTATTTTTACAGGAGCGTTCACAAGGTGCGGCGGGGT
CAACTATTGTAGCATCAATGGAGGGGACAAGGCCAATCCTTGTAGAAATTCAATCCTTAGTTACACCTACAAGCTTTAAC
TATCCTAAACGTATGGCCACAGGTGTCGATCAAAACCGAGTACAATTGCTAATGGCTGTACTAGAAAAGCGTATGGGTCT
CATGCTACAAGCTCAGGATGCATATATTAAAGTTGCTGGTGGTGTCAAGCTGGATGAGCCAGCAATAGATTTAGCAGTGT
TGACAAGCATTGTATCTAGTTTTAAGGATCAGGCAGTGCGTGCAACGGATTGTTTTATTGGTGAGGTCGGACTAACAGGT
GAGGTCCGTCGGGTATCACGTATAGAACAGCGGGTCATTGAAGCGGCGAAGCTTGGATTTAAAAGAGCCTTCATTCCTTC
TTCCAATATTGGTGGTTGGGAATTTCCGCAGGGAATTGAAATTGTTGGTGTAGAAACGATAAAAGATGCACTAAATGCAT
GCTTTAGAGAGTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)

AAA domain (AAA_25)

(64-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.485

99.127

0.699
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62