Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NP781_RS13420 Genome accession   NZ_CP102383
Coordinates   2497354..2499045 (-) Length   563 a.a.
NCBI ID   WP_257520148.1    Uniprot ID   -
Organism   Lysinibacillus sp. FN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2492354..2504045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP781_RS13400 (NP781_13400) - 2492779..2494350 (-) 1572 WP_257520146.1 DUF342 domain-containing protein -
  NP781_RS13405 (NP781_13405) - 2494629..2494808 (-) 180 WP_257520147.1 hypothetical protein -
  NP781_RS13410 (NP781_13410) spo0A 2495107..2495898 (-) 792 WP_016993890.1 sporulation transcription factor Spo0A -
  NP781_RS13415 (NP781_13415) - 2496284..2497231 (-) 948 WP_009370207.1 SpoIVB peptidase S55 domain-containing protein -
  NP781_RS13420 (NP781_13420) recN 2497354..2499045 (-) 1692 WP_257520148.1 DNA repair protein RecN Machinery gene
  NP781_RS13425 (NP781_13425) ahrC 2499079..2499528 (-) 450 WP_004231170.1 transcriptional regulator AhrC/ArgR -
  NP781_RS13430 (NP781_13430) - 2499629..2500447 (-) 819 WP_221680170.1 TlyA family RNA methyltransferase -
  NP781_RS13435 (NP781_13435) dxs 2500447..2502347 (-) 1901 Protein_2682 1-deoxy-D-xylulose-5-phosphate synthase -
  NP781_RS13440 (NP781_13440) - 2502511..2503392 (-) 882 WP_257520149.1 polyprenyl synthetase family protein -
  NP781_RS13445 (NP781_13445) xseB 2503396..2503629 (-) 234 WP_008179899.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63424.23 Da        Isoelectric Point: 4.6214

>NTDB_id=716748 NP781_RS13420 WP_257520148.1 2497354..2499045(-) (recN) [Lysinibacillus sp. FN11]
MLRELSIRNFAIIEDLTVSFLEGLTVLTGETGAGKSIIIDAVHLLAGGRGNTEFIRHGARKAELGGLFQISSSVHPVLKK
LEEAGIEIEEDTIILRRDLNDTGKSICRVNGKLVPLSVLRDIGASLIDIHGQHENQELMDEKQHINLLDQFAEEELSPIQ
KTYRAQYDEYRLLKKDLASISIDEQLMAQRIDLYQFQIKELDEANLKLGEEDELLDERRRLMNFNKIFERSSAAYEAIQG
ETKGLDWIGTAMGALEDAATVDEQFKESSEAVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQTLKRKYGST
VEEILAYYEKIKNELNELLNRDEILQVKERRVLEMEAVLNELASELSTVRKAAAQQLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQIIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVNSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLSEIDQDARIEEVSRMMSGTEITALTLQHATELLKMADERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=716748 NP781_RS13420 WP_257520148.1 2497354..2499045(-) (recN) [Lysinibacillus sp. FN11]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATCATTGAGGATTTGACTGTCAGCTTTTTAGAAGGCTTAACAGTTCT
CACTGGGGAAACAGGTGCCGGAAAATCCATTATCATTGATGCGGTGCATTTACTTGCAGGTGGACGAGGCAACACTGAAT
TTATTCGTCATGGCGCAAGAAAAGCAGAATTGGGTGGCTTATTTCAAATTTCGAGTTCAGTTCATCCTGTTCTGAAAAAG
TTAGAAGAAGCAGGCATTGAAATAGAAGAAGATACAATTATTTTACGTCGAGATTTGAATGATACTGGTAAAAGTATTTG
CCGAGTGAATGGTAAGCTTGTGCCTTTATCGGTACTAAGAGACATTGGGGCAAGTCTCATTGATATTCATGGCCAACATG
AAAATCAAGAGCTAATGGATGAAAAGCAGCACATAAATTTGCTTGATCAATTTGCAGAAGAAGAGTTGTCGCCGATTCAA
AAAACCTATCGAGCGCAATACGATGAATACCGTTTGCTCAAAAAAGACTTAGCTTCGATATCCATTGATGAGCAGTTGAT
GGCACAACGTATCGATTTGTATCAATTTCAAATTAAAGAGTTGGACGAAGCTAATTTAAAGTTAGGTGAGGAAGACGAGC
TTCTAGACGAACGCCGTCGTCTGATGAATTTTAATAAAATTTTTGAACGCTCTAGTGCAGCCTATGAAGCCATTCAAGGT
GAAACAAAAGGGCTTGATTGGATCGGAACGGCAATGGGTGCTTTAGAAGATGCTGCAACGGTTGATGAGCAATTCAAAGA
ATCATCTGAGGCAGTTACAACTGCGTTTTATGCATTACAGGATGCAGCCTATCAGGTCAAAAATGTGTTAGATGAATTAG
AATTTGACCCTGCGCGTTTAAACGAGGTTGAGCAGCGATTAGCGTTGTTGCAAACTTTAAAACGCAAATATGGTTCGACA
GTGGAAGAGATCTTGGCTTATTATGAAAAAATTAAAAACGAGTTAAATGAGCTGTTGAATCGTGATGAGATTTTGCAGGT
GAAAGAACGACGTGTGTTAGAGATGGAAGCTGTACTCAATGAGCTGGCTAGTGAACTTTCAACTGTACGTAAAGCTGCAG
CCCAACAATTGAGTGAAGCAATTATGGCAGAGCTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTCAATTTCGAT
GAATTACCCTATTTCGACGCAAATGGGAAAGATCAAATTATCTTCTACATTTCCACAAACGTTGGGGAGCCACCAAAGTC
TTTACCGAAAATTGCATCAGGCGGAGAGTTATCACGAATGATGCTAGCATTGAAAACCATTTTCTCTTCTTCCAATGGAA
TTACTTCCATTATATTTGATGAGGTGGATACAGGTGTTAGTGGTCGTGTTGCGCAAGCGATTGCAGAGAAAATTGCCGCA
ATTTCTGTTAATTCTCAAGTTTTATGTATTTCACATTTACCTCAAGTTGCAGCGATGGCTGATCATCATTACTTCATCAA
AAAAGAAGTCGAACATGATCGAACGTTTACTTCCTTATCAGAAATTGATCAAGATGCTCGTATAGAGGAAGTTAGCCGTA
TGATGTCTGGAACTGAAATTACAGCTTTGACACTACAGCATGCCACGGAGCTTTTAAAAATGGCAGATGAACGAAAAAAA
CAAATGCGTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.513

100

0.538