Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PQS35_RS18985 Genome accession   NZ_CP117044
Coordinates   3897900..3898892 (+) Length   330 a.a.
NCBI ID   WP_000224456.1    Uniprot ID   -
Organism   Escherichia coli strain B-DolR     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3892900..3903892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQS35_RS18960 rbsD 3893207..3893443 (+) 237 Protein_3712 D-ribose pyranase -
  PQS35_RS18965 rbsA 3893451..3894956 (+) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  PQS35_RS18970 rbsC 3894961..3895926 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  PQS35_RS18975 rbsB 3895951..3896841 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  PQS35_RS18980 rbsK 3896967..3897896 (+) 930 WP_012767772.1 ribokinase -
  PQS35_RS18985 cytR 3897900..3898892 (+) 993 WP_000224456.1 ribose operon transcriptional repressor RbsR Regulator
  PQS35_RS18990 mdtD 3898858..3900285 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  PQS35_RS18995 yieP 3900308..3901000 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36563.82 Da        Isoelectric Point: 5.0711

>NTDB_id=716626 PQS35_RS18985 WP_000224456.1 3897900..3898892(+) (cytR) [Escherichia coli strain B-DolR]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGDSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=716626 PQS35_RS18985 WP_000224456.1 3897900..3898892(+) (cytR) [Escherichia coli strain B-DolR]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTGATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361