Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NRF19_RS02800 Genome accession   NZ_CP102377
Coordinates   108074..108703 (-) Length   209 a.a.
NCBI ID   WP_103823348.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain M17     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 103074..113703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF19_RS02785 (NRF19_02765) helD 103315..105369 (-) 2055 WP_327060570.1 DNA helicase IV -
  NRF19_RS02790 (NRF19_02770) - 105493..105939 (+) 447 WP_103178960.1 YccF domain-containing protein -
  NRF19_RS02795 (NRF19_02775) yccS 105958..108093 (+) 2136 WP_327060571.1 YccS family putative transporter -
  NRF19_RS02800 (NRF19_02780) sxy/tfoX 108074..108703 (-) 630 WP_103823348.1 TfoX/Sxy family DNA transformation protein Regulator
  NRF19_RS02805 (NRF19_02785) sulA 108921..109430 (+) 510 WP_103178957.1 SOS-induced cell division inhibitor SulA -
  NRF19_RS02810 (NRF19_02790) ompA 109786..110841 (+) 1056 WP_156238324.1 porin OmpA -
  NRF19_RS02815 (NRF19_02795) matP 110908..111363 (-) 456 WP_103178956.1 macrodomain Ter protein MatP -
  NRF19_RS02820 (NRF19_02800) - 111550..113310 (+) 1761 WP_327060572.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23973.67 Da        Isoelectric Point: 7.8675

>NTDB_id=716624 NRF19_RS02800 WP_103823348.1 108074..108703(-) (sxy/tfoX) [Leclercia adecarboxylata strain M17]
MKKLSYERIYQSAEYLSPLGEVHYRALFGGYTLAVDDTVFAMVSEGELYLRACEESAPYCVKHASTFLSLVKRGRPVLLN
YYRVDEGLWQDREKLLQLSSFALEAARRERSARYKRERLKDLPNLTFQLEILLYEAGITTEEALRALGAEQSWLKIKALN
KHLSYKVLFALEGAITGLHVAALPEVRRQELVEWYKKLPVETPLTPAAD

Nucleotide


Download         Length: 630 bp        

>NTDB_id=716624 NRF19_RS02800 WP_103823348.1 108074..108703(-) (sxy/tfoX) [Leclercia adecarboxylata strain M17]
ATGAAAAAGTTATCGTATGAACGGATCTATCAATCAGCAGAATACCTGTCTCCTCTCGGCGAGGTGCACTATCGCGCCCT
GTTTGGCGGTTACACTCTGGCGGTAGATGACACGGTATTTGCCATGGTGTCGGAAGGGGAGTTATACCTGCGGGCCTGTG
AGGAGAGCGCACCTTACTGTGTAAAACATGCCTCGACTTTCCTGTCGCTGGTAAAGCGGGGGCGGCCTGTGTTGTTGAAC
TATTATCGCGTTGATGAAGGTCTCTGGCAGGATCGCGAAAAGCTTCTGCAGCTCTCCTCGTTTGCGCTGGAAGCGGCGCG
GCGGGAGCGCAGCGCACGCTATAAGCGCGAAAGGCTGAAAGATTTACCCAATCTCACCTTTCAACTGGAGATCCTGCTTT
ATGAAGCGGGCATCACCACCGAAGAGGCATTGCGCGCGCTGGGGGCGGAACAGTCCTGGCTGAAGATCAAAGCGCTGAAC
AAGCACCTCAGTTATAAGGTGCTGTTTGCACTGGAAGGGGCAATCACCGGGCTGCACGTCGCTGCACTCCCGGAAGTCAG
ACGCCAGGAGCTTGTGGAGTGGTACAAAAAGCTGCCGGTAGAGACTCCCCTTACTCCGGCAGCTGATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

60.101

94.737

0.569