Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NRZ32_RS16820 Genome accession   NZ_CP102368
Coordinates   3683055..3684494 (-) Length   479 a.a.
NCBI ID   WP_042049875.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BC18     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678055..3689494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ32_RS16790 (NRZ32_16790) dagF 3678330..3679070 (+) 741 WP_268037631.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  NRZ32_RS16795 (NRZ32_16795) - 3679175..3681079 (+) 1905 WP_268037632.1 BglG family transcription antiterminator -
  NRZ32_RS16800 (NRZ32_16800) npr 3681095..3681367 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  NRZ32_RS16805 (NRZ32_16805) rapZ 3681388..3682254 (-) 867 WP_005305946.1 RNase adapter RapZ -
  NRZ32_RS16810 (NRZ32_16810) ptsN 3682297..3682743 (-) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NRZ32_RS16815 (NRZ32_16815) hpf 3682746..3683033 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  NRZ32_RS16820 (NRZ32_16820) rpoN/rpoN1 3683055..3684494 (-) 1440 WP_042049875.1 RNA polymerase factor sigma-54 Machinery gene
  NRZ32_RS16825 (NRZ32_16825) lptB 3684560..3685285 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  NRZ32_RS16830 (NRZ32_16830) lptA 3685289..3685816 (-) 528 WP_268038939.1 lipopolysaccharide transport periplasmic protein LptA -
  NRZ32_RS16835 (NRZ32_16835) lptC 3685803..3686363 (-) 561 WP_010635927.1 LPS export ABC transporter periplasmic protein LptC -
  NRZ32_RS16840 (NRZ32_16840) kdsC 3686360..3686914 (-) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NRZ32_RS16845 (NRZ32_16845) - 3686914..3687909 (-) 996 WP_268037633.1 KpsF/GutQ family sugar-phosphate isomerase -
  NRZ32_RS16850 (NRZ32_16850) mlaF 3688117..3688917 (+) 801 WP_094697657.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53892.87 Da        Isoelectric Point: 4.3584

>NTDB_id=716564 NRZ32_RS16820 WP_042049875.1 3683055..3684494(-) (rpoN/rpoN1) [Aeromonas dhakensis strain BC18]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDIQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQTAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLKENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=716564 NRZ32_RS16820 WP_042049875.1 3683055..3684494(-) (rpoN/rpoN1) [Aeromonas dhakensis strain BC18]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACA
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTACTCGGCCGGCACAGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGATGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGACGAATCCGGTTACCTGACGGTGTCGCTTGAGGAT
ATTCAGACGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGACTTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAAGGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGCAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCGGCCCCGCGCATCCGGGTCAACGAAACCTATGCCGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.669

100

0.484