Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NRZ30_RS14505 Genome accession   NZ_CP102367
Coordinates   3154622..3156061 (+) Length   479 a.a.
NCBI ID   WP_108570885.1    Uniprot ID   -
Organism   Aeromonas jandaei strain BC17     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3149622..3161061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ30_RS14475 (NRZ30_14475) mlaF 3150201..3151001 (-) 801 WP_268016441.1 phospholipid ABC transporter ATP-binding protein MlaF -
  NRZ30_RS14480 (NRZ30_14480) - 3151209..3152204 (+) 996 WP_041210120.1 KpsF/GutQ family sugar-phosphate isomerase -
  NRZ30_RS14485 (NRZ30_14485) kdsC 3152204..3152758 (+) 555 WP_268016442.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NRZ30_RS14490 (NRZ30_14490) lptC 3152755..3153315 (+) 561 WP_043850961.1 LPS export ABC transporter periplasmic protein LptC -
  NRZ30_RS14495 (NRZ30_14495) lptA 3153302..3153829 (+) 528 WP_041210123.1 lipopolysaccharide transport periplasmic protein LptA -
  NRZ30_RS14500 (NRZ30_14500) lptB 3153833..3154558 (+) 726 WP_268016443.1 LPS export ABC transporter ATP-binding protein -
  NRZ30_RS14505 (NRZ30_14505) rpoN/rpoN1 3154622..3156061 (+) 1440 WP_108570885.1 RNA polymerase factor sigma-54 Machinery gene
  NRZ30_RS14510 (NRZ30_14510) hpf 3156083..3156370 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  NRZ30_RS14515 (NRZ30_14515) ptsN 3156373..3156819 (+) 447 WP_042030121.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NRZ30_RS14520 (NRZ30_14520) rapZ 3156865..3157731 (+) 867 WP_041210126.1 RNase adapter RapZ -
  NRZ30_RS14525 (NRZ30_14525) npr 3157752..3158024 (+) 273 WP_033115454.1 PTS phosphocarrier protein NPr -
  NRZ30_RS14530 (NRZ30_14530) - 3158034..3159938 (-) 1905 WP_268016444.1 BglG family transcription antiterminator -
  NRZ30_RS14535 (NRZ30_14535) dagF 3160046..3160786 (-) 741 WP_268016445.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53842.77 Da        Isoelectric Point: 4.3493

>NTDB_id=716532 NRZ30_RS14505 WP_108570885.1 3154622..3156061(+) (rpoN/rpoN1) [Aeromonas jandaei strain BC17]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLEQEESEVQETAPQEAVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVSSDEVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLEQYAPETPWLNEAKEVILEHMDLLGNRDYRTLARK
TRLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKRQNRWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=716532 NRZ30_RS14505 WP_108570885.1 3154622..3156061(+) (rpoN/rpoN1) [Aeromonas jandaei strain BC17]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCTCTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGAAAGCAATCCTCTGCTGGAGCAGGAAGAGAGCGAAG
TGCAGGAGACTGCCCCGCAAGAGGCCGTCGATGCCAGCCAGCTCGACTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GACGAGTTGCCGGTTGATACCACTTGGGATGAGGTTTACTCCGCCGGTACTGCCCAGAGCGCAGGCCCGATCCACGACGG
TGAAGACAGCGTCTATCAGGGAGAAACCACCGAAAACCTGCAGGACTATCTACTGTGGCAGATGCGGCTCACTCCGTTTA
GCGATGTCGATGCCGCCATCGCGCTCGCTATCATCGATGCCATCGACGAGTCCGGTTATCTGACCGTTGCACTGGAGGAT
ATCCAGGCTGCCGTCAGCAGTGATGAGGTAGAGGTCGAGCTCGACGAGGTGGAGGCTGTTCTCAAACGGGTGCAGCATTT
TGACCCGGTCGGTATCGCCGCCCGCTCGGTGCAGGAGTGTCTGCTTATCCAGTTGGAGCAGTATGCCCCCGAAACGCCTT
GGCTCAACGAAGCCAAAGAGGTGATCCTCGAGCACATGGATCTGCTAGGCAACCGCGATTATCGCACTCTGGCCCGTAAA
ACCCGCCTCAAGGAGAGCGACCTCAAAGAGGTGCTGGATCTGATCCAGCTGCTGGAACCCCGCCCCGGTAACGGCATTAT
CCAGAGCGACTCCCAGTATGTGATCCCCGATGTTTCGGTGGTAAAGCGCCAGAACCGCTGGGTGGTGGAGCTCAACCCCG
ATTCCGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACGGATACCCAATTC
ATCCGCTCCCACCTGCAGGAGGCCAAGTGGTTCATCAAGAGCCTTGAGAGCCGCAACGATACCCTGCTGAAAGTAGCCAG
CTGTATTGTCGAGCAGCAGCAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCATGAGTCGACCATCTCCCGCGTGACCACCCAGAAATACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGTGCGCTCATCAA
AAAGCTGGTGACGGCAGAGAATCCTGCCAAACCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCTAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.401

100

0.484