Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PQS36_RS02200 Genome accession   NZ_CP117043
Coordinates   466475..467080 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain B-RalR     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461475..472080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQS36_RS02170 rsmS 462180..462341 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  PQS36_RS02175 priC 462355..462882 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  PQS36_RS02180 ybaN 462952..463329 (+) 378 WP_001188905.1 DUF454 family protein -
  PQS36_RS02185 apt 463482..464033 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PQS36_RS02190 dnaX 464162..466093 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PQS36_RS02195 ybaB 466146..466475 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PQS36_RS02200 recR 466475..467080 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PQS36_RS02205 htpG 467190..469064 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  PQS36_RS02210 adk 469245..469889 (+) 645 WP_001220233.1 adenylate kinase -
  PQS36_RS02215 hemH 470125..471087 (+) 963 WP_001250117.1 ferrochelatase -
  PQS36_RS02220 aes 471084..472043 (-) 960 WP_000801849.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=716486 PQS36_RS02200 WP_001195025.1 466475..467080(+) (recR) [Escherichia coli strain B-RalR]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=716486 PQS36_RS02200 WP_001195025.1 466475..467080(+) (recR) [Escherichia coli strain B-RalR]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443