Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NRZ31_RS12710 Genome accession   NZ_CP102365
Coordinates   2740097..2741536 (-) Length   479 a.a.
NCBI ID   WP_010635929.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BC15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2735097..2746536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRZ31_RS12680 (NRZ31_12680) dagF 2735372..2736112 (+) 741 WP_267996208.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  NRZ31_RS12685 (NRZ31_12685) - 2736217..2738121 (+) 1905 WP_267996209.1 BglG family transcription antiterminator -
  NRZ31_RS12690 (NRZ31_12690) npr 2738137..2738409 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  NRZ31_RS12695 (NRZ31_12695) rapZ 2738430..2739296 (-) 867 WP_005305946.1 RNase adapter RapZ -
  NRZ31_RS12700 (NRZ31_12700) ptsN 2739339..2739785 (-) 447 WP_010635930.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NRZ31_RS12705 (NRZ31_12705) hpf 2739788..2740075 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  NRZ31_RS12710 (NRZ31_12710) rpoN/rpoN1 2740097..2741536 (-) 1440 WP_010635929.1 RNA polymerase factor sigma-54 Machinery gene
  NRZ31_RS12715 (NRZ31_12715) lptB 2741602..2742327 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  NRZ31_RS12720 (NRZ31_12720) lptA 2742331..2742858 (-) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  NRZ31_RS12725 (NRZ31_12725) lptC 2742845..2743405 (-) 561 WP_054543610.1 LPS export ABC transporter periplasmic protein LptC -
  NRZ31_RS12730 (NRZ31_12730) kdsC 2743402..2743956 (-) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NRZ31_RS12735 (NRZ31_12735) - 2743956..2744951 (-) 996 WP_005305976.1 KpsF/GutQ family sugar-phosphate isomerase -
  NRZ31_RS12740 (NRZ31_12740) mlaF 2745159..2745959 (+) 801 WP_017766396.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53848.82 Da        Isoelectric Point: 4.3584

>NTDB_id=716476 NRZ31_RS12710 WP_010635929.1 2740097..2741536(-) (rpoN/rpoN1) [Aeromonas dhakensis strain BC15]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLKENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=716476 NRZ31_RS12710 WP_010635929.1 2740097..2741536(-) (rpoN/rpoN1) [Aeromonas dhakensis strain BC15]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTATTCGGCAGGCACGGCTCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GCGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGACGAATCCGGTTATCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGCGAGGATGTCGAGGTGGAACTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATCCAGCTGGGCCAGTACTCCCCTGATCTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAAGGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGAAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCTG
ACTCGGCCCCGCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCAGACAGGCTCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCCCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGTCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTCTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACTACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTAAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486