Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   PO908_RS06370 Genome accession   NZ_CP117042
Coordinates   1218530..1220764 (-) Length   744 a.a.
NCBI ID   WP_021001822.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1213530..1225764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS06355 (PO908_06335) - 1216515..1216880 (+) 366 WP_021001820.1 GntR family transcriptional regulator -
  PO908_RS06360 (PO908_06340) - 1216884..1217579 (+) 696 WP_003024105.1 ABC transporter ATP-binding protein -
  PO908_RS06365 (PO908_06345) - 1217597..1218394 (+) 798 WP_003024102.1 hypothetical protein -
  PO908_RS06370 (PO908_06350) recJ 1218530..1220764 (-) 2235 WP_021001822.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  PO908_RS06375 (PO908_06355) - 1220860..1221276 (-) 417 WP_021001823.1 GNAT family N-acetyltransferase -
  PO908_RS06380 (PO908_06360) - 1221254..1221991 (-) 738 WP_003024095.1 class I SAM-dependent methyltransferase -
  PO908_RS06385 (PO908_06365) - 1222001..1222756 (-) 756 WP_021001824.1 SDR family oxidoreductase -
  PO908_RS06390 (PO908_06370) - 1222766..1223374 (-) 609 WP_021001825.1 histidine phosphatase family protein -
  PO908_RS06395 (PO908_06375) rnz 1223421..1224350 (-) 930 WP_021001826.1 ribonuclease Z -
  PO908_RS06400 (PO908_06380) - 1224361..1224990 (-) 630 WP_021001827.1 hypothetical protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83552.40 Da        Isoelectric Point: 4.4490

>NTDB_id=716440 PO908_RS06370 WP_021001822.1 1218530..1220764(-) (recJ) [Streptococcus anginosus strain CGMH_KH1]
MITSKYDWQIATNFSDESFIKKAKKLGLEASVANLVYQRGIQTEEALRDFLEPSLDQLHDPYELHDMDKAVTRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQGVSLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEVLPDAYAIIHPEHPEADYPFKHLAGCGVAFKLATALLEEVQVELLDLVAIGTIADMVSLTDENR
ILVKYGLSVLKNTQRIGLQELFKIAGIQENEVDEETVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINQKN
EERKEIVQKIYDEAKTMVNPDNPVQVLAGEGWNPGVLGIVAGRLLEELHQPVIVLNIENGLAKGSARSIEAVDIFEALDP
HRDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNKLDLSTKNDLFLDEELSLPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKVENARTMGAGNTHLKLKISQADAVFEVVAFGLGDLATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVN
GIQLFNIRGKNAPLPENVPVLRFSEEIPNFEKSRAVVVYDLPERLNQLKAIIQQGHFEAIYFKNEIAQPYYLTGFGTRDQ
FAKLYKTIYQFPEFDIRYKLKELAAYLKIDPILLIKMIQIFEELDFVTIQDGMMQVNKKAEKKAIENSHIYQELKKTVKE
QELMALGTVQEIYDYLIEKDEFSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=716440 PO908_RS06370 WP_021001822.1 1218530..1220764(-) (recJ) [Streptococcus anginosus strain CGMH_KH1]
ATGATTACATCAAAATATGATTGGCAGATTGCCACAAATTTTTCAGATGAGAGCTTTATTAAAAAAGCTAAAAAACTTGG
CTTGGAGGCTTCGGTAGCTAATCTGGTCTACCAGAGAGGAATCCAGACAGAAGAAGCACTGCGAGATTTTCTAGAGCCTA
GTTTGGACCAGCTGCATGATCCTTATGAGCTGCATGATATGGATAAGGCAGTGACGCGCATTCGTCAAGCGATTGAAAAT
TATGAGCAGATCTTGATTTATGGAGATTATGATGCGGATGGCATGACTTCGGCTTCTATTGTTAAAGAAGCACTAGAACA
ACTTGGAGCAGAGTGTCAGGTCTATTTGCCCAATCGATTTACAGACGGTTATGGCCCTAACGCGAGTGTTTACAAGTATT
TTATTGAAAATCAGGGAGTTTCACTCATCGTTACAGTGGATAATGGAGTTGCAGGACATGAAGCAATCGAACTAGCTCAG
TCTATGGGAGTGGATGTCATTGTGACGGATCACCATTCTATGCCAGAGGTACTTCCTGATGCTTATGCAATTATTCACCC
AGAACATCCGGAAGCTGATTATCCTTTTAAGCATTTAGCTGGTTGCGGTGTAGCTTTTAAGTTAGCGACTGCTCTTTTAG
AGGAAGTACAAGTAGAGTTGCTAGATCTAGTCGCTATTGGAACTATTGCAGATATGGTCAGCCTAACAGATGAAAATCGC
ATTCTGGTCAAATATGGGCTAAGTGTCCTCAAAAACACTCAACGAATCGGCTTGCAGGAGCTTTTTAAGATTGCAGGTAT
TCAGGAAAATGAAGTGGATGAAGAAACAGTTGGTTTTCAGATAGCCCCTAGGCTCAATGCTCTAGGTCGACTTGATGATC
CAAATCCTGCTATTGAACTTCTGACCGGCTTTGATGAGGAAGAAGCGCGTGATATTGCCCTAATGATTAACCAGAAAAAT
GAAGAACGCAAAGAAATTGTTCAGAAGATCTATGATGAAGCCAAGACCATGGTTAATCCCGATAATCCTGTTCAAGTTCT
AGCTGGTGAAGGTTGGAATCCAGGTGTCTTGGGAATTGTGGCAGGGCGGCTTTTGGAAGAATTGCACCAGCCAGTTATTG
TCTTGAATATTGAGAATGGATTAGCAAAAGGCAGCGCCCGCAGCATTGAAGCAGTTGATATTTTTGAAGCGTTAGACCCT
CATCGAGATTTATTTGTGGCTTTTGGTGGGCATGCAGGGGCAGCTGGGATGACTCTAGAGGCCAGCAAGTTAGAAGCACT
CAGTCAGGTTTTGGTAGCATATATTGAGGACAACAAGCTGGATTTGTCTACTAAGAATGATCTCTTTTTGGATGAGGAAT
TATCCTTGCCAGATTTGACACTAGAGACCCTCAAAAACTTTGAAAAGTTAGCTCCTTTTGGCATGGACAATAAAAAGCCT
GTTTTTTATTTGAAAGATTTTAAGGTTGAAAATGCCCGCACCATGGGAGCAGGGAATACTCACCTTAAGCTGAAAATTTC
TCAGGCTGACGCAGTTTTTGAGGTCGTAGCTTTTGGTCTGGGTGATCTTGCGACAGAATTTTCCCAAACTAAAAACTTAG
AGCTGGCGGTTACGCTGTCGGTTAATAAATGGAATGGTCAGACCAGTCTCCAGCTTATGCTGGTGGATGCTCGGGTCAAT
GGGATTCAGCTCTTTAATATCCGAGGTAAAAATGCTCCTTTACCTGAAAATGTGCCCGTCCTGCGTTTTTCAGAAGAAAT
TCCTAATTTTGAAAAGAGCAGAGCAGTTGTAGTGTATGACTTGCCTGAACGCCTAAATCAGCTCAAAGCAATCATTCAGC
AAGGACATTTTGAAGCAATTTACTTTAAAAATGAGATTGCTCAGCCCTATTATCTGACAGGTTTCGGAACGAGAGACCAG
TTTGCAAAACTCTATAAAACAATTTATCAATTTCCAGAGTTTGACATTCGTTATAAGCTCAAAGAACTAGCTGCTTATCT
CAAGATTGACCCAATTCTACTCATAAAGATGATTCAGATATTTGAAGAGCTGGACTTTGTGACAATTCAAGATGGAATGA
TGCAAGTAAACAAAAAAGCAGAAAAAAAGGCTATTGAAAACAGCCATATTTATCAAGAACTGAAGAAAACAGTCAAGGAG
CAGGAGCTTATGGCTCTAGGAACGGTGCAGGAAATTTATGATTATCTGATAGAAAAAGATGAATTTTCAAACTAA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(590-734)

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

76.892

99.462

0.765
  recJ Bacillus subtilis subsp. subtilis str. 168

38.531

100

0.402