Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   PO908_RS03955 Genome accession   NZ_CP117042
Coordinates   723771..727451 (+) Length   1226 a.a.
NCBI ID   WP_394468106.1    Uniprot ID   -
Organism   Streptococcus anginosus strain CGMH_KH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 718771..732451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO908_RS03945 (PO908_03925) - 719167..720381 (+) 1215 WP_394468104.1 ABC transporter permease -
  PO908_RS03950 (PO908_03930) rexB 720502..723774 (+) 3273 WP_394468105.1 ATP-dependent nuclease subunit B Machinery gene
  PO908_RS03955 (PO908_03935) rexA 723771..727451 (+) 3681 WP_394468106.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  PO908_RS03960 (PO908_03940) glgB 727971..729881 (+) 1911 WP_106083244.1 1,4-alpha-glucan branching protein GlgB -
  PO908_RS03965 (PO908_03945) - 729885..731027 (+) 1143 WP_049513651.1 glucose-1-phosphate adenylyltransferase -
  PO908_RS03970 (PO908_03950) glgD 731017..732156 (+) 1140 WP_049533578.1 glucose-1-phosphate adenylyltransferase subunit GlgD -

Sequence


Protein


Download         Length: 1226 a.a.        Molecular weight: 141534.34 Da        Isoelectric Point: 5.3956

>NTDB_id=716413 PO908_RS03955 WP_394468106.1 723771..727451(+) (rexA) [Streptococcus anginosus strain CGMH_KH1]
MRQIPFLSQEEIYTLQEREAQSDKAQKRTPEQIEAIYSSGQNILVSASAGSGKTFVMVQRIVDQILRGVRIEQLFISTFT
VKAASELKERLEKELSKVLKATDDEELKQHLAQQLADIPNADIGTMDSFTQKVLNKYGYLLELAPNFRILQSASEQLLLQ
NEVFEQVFEEFYQSDQADLFKKLVKNFIGQRKDLLGFREQVYKIYAFLQSTSSPIAWLGKDFLKGYERADFQEEKARLLA
QIKEALYDLEDFFHYHLANEAKEFPKAKYLENVQSVLDCLASLQGQSSEEAYVTALDRIVEISRASNGKALTNSGRKEEL
KEIINTYNEKRKEKIQVLRDLADQFYRFEFQVTYHEEAKEILLVLQRFMKAFVESYLNRKKEENAFEFADVSHFAIQILE
EFPDVRHFYRNKYHEVMVDEYQDTNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKFKLYQDDSQQGKLIV
LKENFRSHVEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPDKKEPNPQYQTEFLIYDGTLETNNEENDKDVSSVSAG
EVALVIKEIIRLHNEENVQFEDITLLTASRTRNDMILAEFAKYGIPVVSDGGEDNYLQSVEVMVMLDTLRTINNPLNDYA
LVALLKSPMFTFTEDELARLALQKKVTEANHVVHQENLYEKLKNALSGHGQHPELITPPILKKIQQFQEILLDWREFAKI
NSLYDLLWKIYQDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRFIGMIDKILETQNDLASVVVAAPKHAV
RLMTVHKSKGLEFKYVFLLNTDKAFNRKDSSSALILSRQNGVGIKYVADVAVDVTDKLAPNHVRLSIDTLPYVQNEREIH
LESISEQMRLLYVAMTRAERKLYLVGKGRQESLEKKTFPAPEKGRLAASIRQTMTSFQDWIWALQTVFKNDDLTFSTRFV
TDSDLTSEKIGQLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEPVIDTDGVEI
MEKKTPDFIGKTSFELPDFAKKAPVTGAQIGSAVHELMQRIPLNQLPTLAILKETLAQVQAEEIVKKKIDLQKIAGFFET
ELGQLLLKQADKVYREAPFAMLKQDQASGQDFVVRGILDGYLLLMDRIILFDYKTDQYTNPSELVERYQAQLSLYAEALR
RSYGIEKIEKYLVLLGGVQLQVVKVD

Nucleotide


Download         Length: 3681 bp        

>NTDB_id=716413 PO908_RS03955 WP_394468106.1 723771..727451(+) (rexA) [Streptococcus anginosus strain CGMH_KH1]
ATGAGACAGATTCCATTTTTGAGTCAGGAAGAAATCTATACTTTGCAGGAACGAGAAGCTCAGTCTGACAAAGCTCAAAA
ACGTACACCAGAGCAAATCGAAGCTATTTACTCCTCCGGTCAAAATATTCTTGTGTCTGCTTCTGCAGGATCAGGAAAAA
CCTTTGTTATGGTGCAGCGGATTGTTGACCAAATTTTGCGGGGAGTTCGTATTGAGCAGCTCTTCATTTCGACCTTTACC
GTTAAAGCCGCAAGTGAGCTAAAAGAGCGCTTGGAAAAAGAGTTATCCAAGGTTTTGAAGGCAACAGATGATGAGGAGCT
CAAACAGCACTTGGCGCAGCAATTAGCTGATATTCCGAATGCTGACATTGGTACCATGGACTCTTTCACCCAAAAAGTCC
TGAATAAATATGGTTATCTCCTAGAATTGGCGCCGAATTTTCGCATTTTACAAAGCGCAAGTGAGCAGTTATTGCTGCAA
AATGAAGTTTTCGAGCAAGTTTTTGAAGAATTCTATCAATCTGATCAGGCTGATTTATTTAAAAAATTAGTCAAAAACTT
TATCGGTCAAAGAAAAGATTTGCTCGGTTTTCGAGAGCAGGTTTATAAGATTTATGCTTTTTTGCAATCCACCAGTAGTC
CAATAGCATGGTTGGGAAAAGACTTTTTGAAAGGCTATGAGCGTGCGGATTTTCAAGAAGAAAAAGCGCGACTTTTAGCA
CAAATAAAAGAAGCTCTTTATGACCTAGAAGATTTTTTCCATTATCATTTGGCGAATGAAGCCAAGGAATTTCCAAAAGC
AAAATACCTTGAAAATGTTCAGAGCGTGCTTGATTGTCTGGCAAGCTTACAAGGACAGTCCTCTGAGGAAGCTTATGTCA
CAGCACTTGATAGAATTGTAGAGATTTCACGCGCAAGCAATGGCAAAGCCTTGACAAACAGCGGACGCAAAGAAGAATTA
AAAGAAATCATCAACACCTATAATGAAAAGCGCAAAGAAAAAATTCAAGTTTTACGAGATTTGGCAGATCAATTTTATCG
CTTTGAATTTCAAGTGACCTATCATGAAGAAGCAAAGGAAATCCTGCTTGTCTTACAACGGTTTATGAAAGCATTTGTTG
AAAGTTATTTGAACCGCAAAAAAGAAGAAAATGCGTTTGAGTTTGCAGACGTCAGTCATTTTGCTATTCAGATTTTGGAA
GAATTTCCTGATGTGCGCCATTTTTATCGAAATAAATATCATGAAGTTATGGTGGATGAGTATCAAGACACCAATCATAC
GCAAGAACGTATGCTAGAACTGTTATCAAATGGACATAATCGCTTTATGGTGGGGGATATTAAGCAGTCTATTTATCGTT
TTCGTCAGGCTGATCCACAGATTTTTAACGATAAGTTCAAGTTGTATCAAGACGATAGCCAGCAAGGGAAATTGATTGTT
TTGAAAGAGAATTTCCGCAGTCATGTGGAAGTCTTGGAAGCCACGAATGACGTTTTCAAACGTCTCATGGATGAGGAAGT
GGGAGAAATTGATTACAATGAGACGCATTATCTGGTAGCTGGAAATCCTGATAAGAAAGAGCCAAATCCACAATATCAGA
CGGAGTTTCTCATTTATGACGGAACACTTGAGACGAATAATGAGGAGAATGACAAGGATGTTTCTTCTGTTTCTGCAGGA
GAAGTAGCGCTGGTCATTAAGGAAATTATCCGTCTGCACAATGAGGAAAATGTCCAATTTGAGGATATTACTTTGCTAAC
AGCTTCACGCACACGCAACGATATGATTCTAGCTGAGTTCGCTAAATATGGTATTCCTGTCGTTTCAGACGGTGGTGAGG
ACAATTACCTTCAGTCTGTTGAAGTCATGGTGATGTTAGACACCTTGCGTACAATTAACAACCCTCTCAATGATTACGCT
TTGGTGGCACTTCTAAAGTCACCAATGTTCACCTTTACTGAGGATGAATTGGCTCGTTTGGCCTTGCAAAAAAAGGTGAC
TGAAGCTAATCACGTTGTTCATCAGGAAAATCTCTATGAGAAATTGAAAAACGCTTTGAGTGGACACGGCCAACATCCCG
AACTCATTACACCTCCTATTTTAAAGAAAATCCAGCAGTTTCAAGAAATACTGCTGGATTGGCGAGAATTTGCAAAAATA
AATTCGCTCTATGATTTGCTTTGGAAAATTTATCAAGATCGTTTTTATTACGATTATGTGGGAGCTTTACCAAATGGAGC
GGGACGTCAGGCAAATCTCTACGCTCTTACTTTGCGAGCAAATGACTACGAAAAGATGAGTTTTAAAGGTCTATCTCGTT
TTATTGGGATGATTGACAAAATATTGGAGACACAGAACGATTTGGCGAGTGTCGTCGTTGCGGCTCCGAAGCATGCAGTC
CGCTTGATGACAGTTCATAAGAGCAAAGGTTTGGAATTTAAATATGTATTTTTGCTTAATACGGATAAAGCCTTCAATCG
TAAGGATAGCAGCTCTGCCTTGATTCTCAGTCGTCAAAATGGCGTCGGTATCAAGTATGTCGCGGACGTAGCGGTAGATG
TAACTGATAAGTTGGCGCCTAATCATGTTCGTTTGTCTATCGATACTCTTCCTTATGTGCAAAATGAGCGTGAGATTCAT
TTGGAAAGTATTTCTGAGCAAATGCGTCTGCTCTATGTTGCTATGACGCGGGCAGAAAGAAAGCTATATCTGGTTGGCAA
AGGTCGTCAAGAAAGCTTGGAGAAAAAGACCTTCCCTGCTCCTGAAAAAGGTCGTTTAGCAGCCTCCATTAGGCAAACTA
TGACAAGTTTTCAAGACTGGATTTGGGCTTTGCAAACCGTCTTTAAGAATGATGACTTAACCTTTTCAACCCGATTTGTG
ACGGATAGCGATTTAACAAGTGAGAAAATAGGTCAGCTAAAGCTAAAGGAACGGATTGTCGAGGAGAACTTAGCGCACAA
TCGCCAGTCTGAGGATATTCGCAGGGCTTTGGATATTTTGGAAAATGTGGACAGGCTAAATACTCAGTATCGAGCAGCCA
TCCATTTGCCAAGTGTTCGGACACCGAGCCAAATCAAGAAATTTTATGAGCCGGTCATAGACACAGACGGCGTTGAAATT
ATGGAGAAAAAAACTCCAGATTTTATTGGAAAAACTTCTTTTGAACTACCAGACTTTGCTAAAAAAGCCCCTGTTACAGG
AGCGCAAATCGGTAGTGCTGTCCATGAACTGATGCAGCGTATTCCTTTAAATCAACTGCCTACATTAGCTATTTTAAAGG
AAACATTGGCTCAGGTGCAGGCAGAAGAAATTGTCAAAAAGAAGATTGATTTGCAAAAGATAGCTGGTTTCTTTGAGACA
GAGCTTGGTCAACTGCTCTTGAAGCAGGCGGATAAAGTTTATCGTGAAGCTCCTTTTGCTATGTTAAAGCAAGATCAAGC
GAGCGGACAGGATTTTGTAGTCCGTGGAATTTTGGACGGTTATCTACTGTTGATGGACCGAATCATTCTCTTTGATTATA
AGACAGATCAATATACAAATCCAAGTGAATTAGTGGAGCGCTACCAAGCACAATTATCACTTTATGCTGAAGCCCTTCGT
CGTTCGTATGGTATTGAAAAAATAGAAAAATATCTAGTGCTGCTAGGCGGAGTTCAACTTCAAGTAGTAAAAGTAGACTA
G


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

61.338

100

0.613