Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K6K39_RS39850 Genome accession   NZ_AP024135
Coordinates   9145424..9146446 (-) Length   340 a.a.
NCBI ID   WP_059256124.1    Uniprot ID   -
Organism   Streptomyces sp. EAS-AB2608 strain NBRC 114648     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9140424..9151446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6K39_RS39835 (EASAB2608_08163) - 9140853..9141707 (-) 855 WP_059256118.1 glycoside hydrolase family 6 protein -
  K6K39_RS39840 (EASAB2608_08164) - 9141759..9143939 (-) 2181 WP_059256120.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  K6K39_RS39845 (EASAB2608_08165) - 9144051..9145169 (-) 1119 WP_059256121.1 GH12 family glycosyl hydrolase domain-containing protein -
  K6K39_RS39850 (EASAB2608_08166) cytR 9145424..9146446 (-) 1023 WP_059256124.1 LacI family DNA-binding transcriptional regulator Regulator
  K6K39_RS39855 (EASAB2608_08167) - 9147354..9149984 (-) 2631 WP_059256486.1 SpoIIE family protein phosphatase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37137.22 Da        Isoelectric Point: 5.3325

>NTDB_id=71640 K6K39_RS39850 WP_059256124.1 9145424..9146446(-) (cytR) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
MGKRRPGTPTLEEVAAHAGVGRGTVSRVVNNEAGVKESTRRVVQQAIAELGYVPNLAARSLAGRRADAVALVMTEPDWRM
FAEPFFSEIVTSLGDALTDTGMQLLLTLVRSDTERRRFLEYARGGRVDGVLLMSVHADDPLPDMLAETRLPTVLLGRRSA
DEHVSYVDADNVGGARSAVAHLLESGRRTIATITGPLDMYVAQCRLRGYREALAQAGLEALPSWVAEGDFTEESGRRAME
RLIERHPEIDGVLAASDTTAAGALQALRAAGRRVPEDVAVIGFDDFPLAERTQPRLTTVRQPLEEIGRAMVRLLLEEVEE
SSVAWRHVILRTELVVRDSA

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=71640 K6K39_RS39850 WP_059256124.1 9145424..9146446(-) (cytR) [Streptomyces sp. EAS-AB2608 strain NBRC 114648]
ATGGGCAAGCGGCGCCCTGGCACGCCGACGCTGGAGGAGGTGGCCGCTCACGCCGGAGTGGGCCGGGGCACGGTCTCCCG
CGTCGTCAACAACGAGGCGGGCGTGAAGGAGTCGACACGCCGGGTGGTGCAGCAGGCCATCGCGGAACTGGGCTACGTGC
CCAATCTCGCGGCCCGCTCGCTCGCCGGACGGCGCGCCGACGCCGTCGCGCTCGTCATGACGGAGCCGGACTGGCGGATG
TTCGCGGAGCCGTTCTTCTCGGAGATCGTCACCTCGCTCGGCGACGCCCTGACGGACACCGGGATGCAGCTGCTGCTGAC
GCTGGTCCGCTCGGACACCGAGCGGCGGCGCTTCCTGGAGTACGCCCGTGGCGGCCGGGTCGACGGGGTGCTGCTGATGT
CCGTGCACGCCGACGATCCGCTGCCCGACATGCTCGCCGAGACCCGGCTGCCGACGGTCCTGCTGGGCCGCCGCTCGGCC
GACGAGCACGTCAGCTACGTCGACGCGGACAATGTCGGCGGTGCCCGCAGCGCGGTCGCCCACCTGCTGGAGTCGGGCCG
GCGGACGATCGCCACGATCACCGGGCCGCTCGACATGTACGTCGCCCAGTGCCGGCTGCGCGGCTACCGCGAGGCCCTGG
CCCAGGCCGGGCTGGAGGCGCTGCCGTCCTGGGTCGCCGAGGGCGACTTCACCGAGGAGAGCGGCCGGCGCGCCATGGAA
CGGCTGATCGAGCGGCATCCGGAGATCGACGGCGTGCTCGCCGCCTCCGACACCACGGCCGCCGGGGCCCTGCAGGCGCT
GCGCGCGGCGGGCCGCCGGGTGCCGGAGGACGTCGCCGTCATCGGCTTCGACGACTTCCCGCTGGCCGAGCGGACCCAGC
CCCGGCTGACCACCGTACGGCAGCCGCTGGAGGAGATCGGGCGGGCCATGGTCCGGCTGCTCCTGGAGGAGGTCGAGGAG
TCGTCCGTGGCGTGGCGGCATGTGATCCTCCGTACGGAGCTGGTGGTGCGCGACTCGGCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-339)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.607

98.824

0.362