Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PPW95_RS07750 Genome accession   NZ_CP117038
Coordinates   1746147..1747082 (+) Length   311 a.a.
NCBI ID   WP_005482134.1    Uniprot ID   Q87IE8
Organism   Vibrio parahaemolyticus strain VP220218     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1741147..1752082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPW95_RS07725 (PPW95_07725) - 1741684..1742157 (-) 474 WP_031856150.1 copper chaperone PCu(A)C -
  PPW95_RS07730 (PPW95_07730) - 1742248..1742709 (-) 462 WP_031856149.1 hypothetical protein -
  PPW95_RS07735 (PPW95_07735) - 1743089..1744132 (+) 1044 WP_031851750.1 hypothetical protein -
  PPW95_RS07740 (PPW95_07740) - 1744372..1745052 (+) 681 WP_005455737.1 Crp/Fnr family transcriptional regulator -
  PPW95_RS07745 (PPW95_07745) - 1745216..1746124 (+) 909 WP_005487329.1 siderophore ABC transporter substrate-binding protein -
  PPW95_RS07750 (PPW95_07750) ceuB 1746147..1747082 (+) 936 WP_005482134.1 iron chelate uptake ABC transporter permease subunit VctD Machinery gene
  PPW95_RS07755 (PPW95_07755) vctG 1747075..1748025 (+) 951 WP_005482136.1 iron chelate uptake ABC transporter permease subunit VctG -
  PPW95_RS07760 (PPW95_07760) vctC 1748028..1748783 (+) 756 WP_029559642.1 iron chelate ABC transporter ATP-binding protein VctC -
  PPW95_RS07765 (PPW95_07765) cueR 1748831..1749217 (-) 387 WP_005486235.1 Cu(I)-responsive transcriptional regulator -
  PPW95_RS07770 (PPW95_07770) - 1749426..1750412 (-) 987 WP_031856148.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 33687.37 Da        Isoelectric Point: 8.9164

>NTDB_id=716359 PPW95_RS07750 WP_005482134.1 1746147..1747082(+) (ceuB) [Vibrio parahaemolyticus strain VP220218]
MKKLLLTLVVLSTVSLFVGVADMTPQQLFSGDAKALELFFTSRIPRLFAILLAGAGLSIAGLVMQQISQNRFAAPSTTGT
IECAMLGYVMSVVFFGDGDHLWLVFGISVLGTLTFVHFIQRIQFKSVVFVPLVGIIFGNVIESMTTFIAYKYDALQSLSA
WSVANFANILRGDFELLYIAVPMVILSYLFAARISAVGIGKDFAVNLGLNYQQVVTIGVLLVSIMSASVVMIVGQLPFLG
LIVPNLVSHFYGDNLKKNIPLTAMYGAILVLGCDLVSRLIIFPHEMPISIVISILGGVVFIAMLLRGKQHA

Nucleotide


Download         Length: 936 bp        

>NTDB_id=716359 PPW95_RS07750 WP_005482134.1 1746147..1747082(+) (ceuB) [Vibrio parahaemolyticus strain VP220218]
TTGAAAAAGTTATTGCTAACCCTTGTGGTTTTAAGCACGGTTTCGTTGTTTGTTGGGGTGGCAGATATGACGCCCCAACA
ATTGTTTTCTGGCGATGCAAAAGCATTAGAGCTTTTCTTTACTAGCCGTATCCCACGTTTATTCGCAATTTTGCTTGCCG
GGGCAGGGCTTAGTATCGCTGGCCTTGTGATGCAGCAGATCAGTCAAAACCGTTTTGCCGCGCCTTCGACCACGGGGACA
ATCGAGTGTGCCATGTTGGGCTACGTAATGAGTGTGGTATTCTTTGGCGATGGTGATCATCTTTGGTTGGTGTTTGGTAT
CTCCGTGCTCGGAACGCTCACGTTTGTGCATTTCATCCAACGTATCCAATTCAAAAGTGTGGTGTTTGTACCCCTTGTCG
GGATTATTTTCGGTAACGTTATTGAATCGATGACCACGTTCATCGCCTACAAGTACGATGCGCTCCAAAGCTTGAGTGCT
TGGTCGGTCGCGAACTTCGCCAACATTTTGCGGGGGGATTTTGAACTGCTCTACATTGCGGTTCCGATGGTGATTCTCAG
TTACTTGTTTGCCGCAAGAATCTCTGCGGTCGGTATTGGTAAAGACTTTGCCGTGAACTTGGGTTTGAACTATCAGCAAG
TGGTTACTATTGGCGTGCTGTTGGTGTCCATCATGTCCGCAAGTGTGGTGATGATAGTTGGTCAGCTGCCGTTTCTTGGC
CTTATTGTGCCGAACCTCGTCAGTCATTTTTACGGTGATAACCTGAAGAAAAACATTCCTTTAACCGCCATGTATGGTGC
CATATTGGTACTCGGCTGTGATTTGGTGAGTCGTTTGATCATCTTCCCTCATGAAATGCCAATTTCCATTGTGATCAGCA
TTTTAGGTGGCGTGGTATTCATTGCGATGTTGCTAAGAGGTAAGCAGCATGCGTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(8-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87IE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

42.994

100

0.434