Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   PPK11_RS07215 Genome accession   NZ_CP117024
Coordinates   1494281..1495330 (-) Length   349 a.a.
NCBI ID   WP_273897572.1    Uniprot ID   -
Organism   Helicobacter pylori strain 444A6     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489281..1500330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPK11_RS07195 rpsL 1490204..1490611 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  PPK11_RS07200 rpsG 1490627..1491094 (+) 468 WP_001254357.1 30S ribosomal protein S7 -
  PPK11_RS07205 fusA 1491106..1493184 (+) 2079 WP_097548687.1 elongation factor G -
  PPK11_RS07210 - 1493765..1494091 (+) 327 WP_000744162.1 hypothetical protein -
  PPK11_RS07215 waaF 1494281..1495330 (-) 1050 WP_273897572.1 lipopolysaccharide heptosyltransferase II Regulator
  PPK11_RS07220 hisS 1495392..1496720 (+) 1329 WP_273897575.1 histidine--tRNA ligase -
  PPK11_RS07225 asd 1496707..1497747 (+) 1041 WP_273897577.1 aspartate-semialdehyde dehydrogenase -
  PPK11_RS07230 - 1498160..1499197 (+) 1038 WP_273897579.1 DUF874 family protein -
  PPK11_RS07235 - 1499426..1500169 (-) 744 WP_273897580.1 carbonic anhydrase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39492.20 Da        Isoelectric Point: 9.3592

>NTDB_id=716337 PPK11_RS07215 WP_273897572.1 1494281..1495330(-) (waaF) [Helicobacter pylori strain 444A6]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPTITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFH
NAYNLCGKTSIEELIERIAVLDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLEAAHTLLEES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=716337 PPK11_RS07215 WP_273897572.1 1494281..1495330(-) (waaF) [Helicobacter pylori strain 444A6]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGTCCAACCATTACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCGGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTCCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGTTTATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTAATAGAGCGCATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCCATGCATGTGGCTGCTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTGTTAAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACTCTTTTAGA
AGAGTCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

38.012

97.994

0.372