Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NRF13_RS00335 Genome accession   NZ_CP102350
Coordinates   45551..45841 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain PMC206     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40551..50841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF13_RS00295 (NRF13_00295) darA 40567..40896 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  NRF13_RS00300 (NRF13_00300) - 40909..41349 (+) 441 WP_004264730.1 YaaR family protein -
  NRF13_RS00305 (NRF13_00305) holB 41361..42350 (+) 990 WP_058906507.1 DNA polymerase III subunit delta' -
  NRF13_RS00310 (NRF13_00310) ricT 42353..43180 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  NRF13_RS00315 (NRF13_00315) yabA 43195..43554 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  NRF13_RS00320 (NRF13_00320) - 43615..44358 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NRF13_RS00325 (NRF13_00325) - 44345..44644 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  NRF13_RS00330 (NRF13_00330) rsmI 44619..45500 (+) 882 WP_044052729.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NRF13_RS00335 (NRF13_00335) abrB 45551..45841 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  NRF13_RS00340 (NRF13_00340) metG 46324..48315 (+) 1992 WP_015388789.1 methionine--tRNA ligase -
  NRF13_RS00345 (NRF13_00345) - 48391..49158 (+) 768 WP_058906508.1 TatD family hydrolase -
  NRF13_RS00350 (NRF13_00350) - 49293..50618 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=716304 NRF13_RS00335 WP_169510469.1 45551..45841(-) (abrB) [Bacillus velezensis strain PMC206]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=716304 NRF13_RS00335 WP_169510469.1 45551..45841(-) (abrB) [Bacillus velezensis strain PMC206]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979