Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NL424_RS21420 Genome accession   NZ_CP117020
Coordinates   4410057..4410662 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MLI106K3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4405057..4415662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL424_RS21390 (NL424_021375) rsmS 4405759..4405923 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  NL424_RS21395 (NL424_021380) priC 4405937..4406464 (-) 528 WP_001522038.1 primosomal replication protein N'' -
  NL424_RS21400 (NL424_021385) ybaN 4406534..4406911 (+) 378 WP_001188905.1 DUF454 family protein -
  NL424_RS21405 (NL424_021390) apt 4407064..4407615 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NL424_RS21410 (NL424_021395) dnaX 4407744..4409675 (+) 1932 WP_255046384.1 DNA polymerase III subunit gamma/tau -
  NL424_RS21415 (NL424_021400) ybaB 4409728..4410057 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NL424_RS21420 (NL424_021405) recR 4410057..4410662 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NL424_RS21425 (NL424_021410) htpG 4410772..4412646 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  NL424_RS21430 (NL424_021415) adk 4412827..4413471 (+) 645 WP_001220233.1 adenylate kinase -
  NL424_RS21435 (NL424_021420) hemH 4413603..4414565 (+) 963 WP_001250117.1 ferrochelatase -
  NL424_RS21440 (NL424_021425) aes 4414562..4415521 (-) 960 WP_000764314.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=716293 NL424_RS21420 WP_001195025.1 4410057..4410662(+) (recR) [Escherichia coli strain MLI106K3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=716293 NL424_RS21420 WP_001195025.1 4410057..4410662(+) (recR) [Escherichia coli strain MLI106K3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443