Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NL415_RS21620 Genome accession   NZ_CP117016
Coordinates   4317006..4317611 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MLI121     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4312006..4322611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL415_RS21585 (NL415_021585) - 4312560..4312658 (+) 99 Protein_4098 hypothetical protein -
  NL415_RS21590 (NL415_021590) rsmS 4312711..4312872 (-) 162 WP_000051157.1 pleiotropic regulatory protein RsmS -
  NL415_RS21595 (NL415_021595) priC 4312886..4313413 (-) 528 WP_000844861.1 primosomal replication protein N'' -
  NL415_RS21600 (NL415_021600) ybaN 4313483..4313860 (+) 378 WP_001188905.1 DUF454 family protein -
  NL415_RS21605 (NL415_021605) apt 4314013..4314564 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NL415_RS21610 (NL415_021610) dnaX 4314693..4316624 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  NL415_RS21615 (NL415_021615) ybaB 4316677..4317006 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NL415_RS21620 (NL415_021620) recR 4317006..4317611 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NL415_RS21625 (NL415_021625) htpG 4317721..4319595 (+) 1875 WP_000678197.1 molecular chaperone HtpG -
  NL415_RS21630 (NL415_021630) adk 4319776..4320420 (+) 645 WP_001220233.1 adenylate kinase -
  NL415_RS21635 (NL415_021635) hemH 4320552..4321514 (+) 963 WP_001250087.1 ferrochelatase -
  NL415_RS21640 (NL415_021640) aes 4321511..4322470 (-) 960 WP_000801806.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=716208 NL415_RS21620 WP_001195025.1 4317006..4317611(+) (recR) [Escherichia coli strain MLI121]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=716208 NL415_RS21620 WP_001195025.1 4317006..4317611(+) (recR) [Escherichia coli strain MLI121]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443