Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NL415_RS15290 Genome accession   NZ_CP117016
Coordinates   2992404..2993396 (+) Length   330 a.a.
NCBI ID   WP_000224462.1    Uniprot ID   -
Organism   Escherichia coli strain MLI121     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2987404..2998396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL415_RS15265 (NL415_015265) rbsD 2987528..2987947 (+) 420 WP_000715936.1 D-ribose pyranase -
  NL415_RS15270 (NL415_015270) rbsA 2987955..2989460 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  NL415_RS15275 (NL415_015275) rbsC 2989465..2990430 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  NL415_RS15280 (NL415_015280) rbsB 2990455..2991345 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NL415_RS15285 (NL415_015285) rbsK 2991471..2992400 (+) 930 WP_001361088.1 ribokinase -
  NL415_RS15290 (NL415_015290) cytR 2992404..2993396 (+) 993 WP_000224462.1 ribose operon transcriptional repressor RbsR Regulator
  NL415_RS15295 (NL415_015295) mdtD 2993362..2994789 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  NL415_RS15300 (NL415_015300) yieP 2994812..2995504 (-) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36637.99 Da        Isoelectric Point: 5.2141

>NTDB_id=716183 NL415_RS15290 WP_000224462.1 2992404..2993396(+) (cytR) [Escherichia coli strain MLI121]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLLHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=716183 NL415_RS15290 WP_000224462.1 2992404..2993396(+) (cytR) [Escherichia coli strain MLI121]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCTGAACTGGTGCGTGGC
GTTGAACGCAGTTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCACGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATTACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAAGTTCCGCAGGA
TATTGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTAGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364