Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NRL00_RS19500 Genome accession   NZ_CP102327
Coordinates   4240224..4241663 (-) Length   479 a.a.
NCBI ID   WP_017784940.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BC05     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4235224..4246663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRL00_RS19470 (NRL00_19470) dagF 4235499..4236239 (+) 741 WP_268009773.1 2-dehydro-3-deoxy-phosphogluconate aldolase -
  NRL00_RS19475 (NRL00_19475) - 4236344..4238248 (+) 1905 WP_268009774.1 BglG family transcription antiterminator -
  NRL00_RS19480 (NRL00_19480) npr 4238264..4238536 (-) 273 WP_005305943.1 PTS phosphocarrier protein NPr -
  NRL00_RS19485 (NRL00_19485) rapZ 4238557..4239423 (-) 867 WP_017779762.1 RNase adapter RapZ -
  NRL00_RS19490 (NRL00_19490) ptsN 4239466..4239912 (-) 447 WP_005305951.1 PTS IIA-like nitrogen regulatory protein PtsN -
  NRL00_RS19495 (NRL00_19495) hpf 4239915..4240202 (-) 288 WP_005305957.1 ribosome hibernation promoting factor -
  NRL00_RS19500 (NRL00_19500) rpoN/rpoN1 4240224..4241663 (-) 1440 WP_017784940.1 RNA polymerase factor sigma-54 Machinery gene
  NRL00_RS19505 (NRL00_19505) lptB 4241729..4242454 (-) 726 WP_005305964.1 LPS export ABC transporter ATP-binding protein -
  NRL00_RS19510 (NRL00_19510) lptA 4242458..4242985 (-) 528 WP_010635928.1 lipopolysaccharide transport periplasmic protein LptA -
  NRL00_RS19515 (NRL00_19515) lptC 4242972..4243532 (-) 561 WP_268009775.1 LPS export ABC transporter periplasmic protein LptC -
  NRL00_RS19520 (NRL00_19520) kdsC 4243529..4244083 (-) 555 WP_017766397.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  NRL00_RS19525 (NRL00_19525) - 4244083..4245078 (-) 996 WP_005305976.1 KpsF/GutQ family sugar-phosphate isomerase -
  NRL00_RS19530 (NRL00_19530) mlaF 4245286..4246086 (+) 801 WP_005305979.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53876.83 Da        Isoelectric Point: 4.3584

>NTDB_id=716178 NRL00_RS19500 WP_017784940.1 4240224..4241663(-) (rpoN/rpoN1) [Aeromonas dhakensis strain BC05]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALDNNPLLEQEENDVQETSPVDQVDVSQLDSSDAMAQDQMP
DELPVDTTWEEVYSAGTAQSAGPIHDGEDSIYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVSLED
IQAAVSSEDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLGQYSPDLPWLNEAREVILEHMDLLGNRDYRTLARK
TKLRENDLKEVLDLIQQLEPRPGNGVIQSESQYVIPDVSVVKKGNKWVVELNPDSAPRIRVNETYAAMARQARTSQDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLLIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=716178 NRL00_RS19500 WP_017784940.1 4240224..4241663(-) (rpoN/rpoN1) [Aeromonas dhakensis strain BC05]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTCCAGCAGGAAATTCAGCAAGCGCTCGACAACAACCCCTTGCTGGAGCAAGAGGAAAACGACG
TTCAGGAGACCAGCCCGGTCGACCAGGTGGACGTCAGCCAGCTCGATTCCAGCGATGCCATGGCCCAGGACCAGATGCCG
GACGAACTGCCGGTGGATACCACCTGGGAAGAGGTCTACTCGGCCGGCACGGCCCAGAGCGCAGGCCCCATCCATGACGG
GGAAGACAGCATCTATCAGGGTGAGACCACCGAGAACCTGCAGGACTACCTGTTGTGGCAGATGCGCTTGACCCCGTTCA
GTGACGTGGATGCCGCCATCGCCCTCGCCATCATAGATGCCATCGATGAATCCGGTTACCTGACGGTGTCGCTTGAGGAT
ATTCAGGCGGCGGTGAGCAGTGAGGATGTCGAGGTGGAGCTCGATGAAGTGGAGGCCGTGCTCAAGCGGGTGCAGCATTT
CGATCCGGTCGGCATCGCCGCCCGCTCGGTGCAGGAGTGCCTGCTGATTCAGCTGGGCCAGTACTCCCCTGACTTGCCCT
GGCTCAACGAAGCCAGGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAACCGCGATTACCGCACCCTGGCCCGCAAG
ACCAAGCTGAGAGAGAACGACCTCAAGGAGGTGCTGGATCTCATCCAGCAGCTGGAGCCGCGGCCCGGCAACGGCGTCAT
CCAGAGCGAATCCCAGTACGTGATCCCGGATGTTTCCGTGGTCAAGAAGGGCAACAAGTGGGTGGTCGAGCTCAACCCGG
ACTCGGCCCCGCGCATCCGGGTCAATGAGACCTATGCTGCCATGGCCAGACAGGCCCGCACCAGTCAGGATACCCAGTTC
ATCCGCTCTCACCTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAGAGCCGCAACGACACCCTGCTCAAGGTGGCCAG
CTGCATCGTCGAGCAGCAGCAGGGCTTTTTCGAATACGGTGAAGAGGCCATGAAACCCATGGTGCTCAACGACATCGCCG
AAGCGGTGGAGATGCACGAGTCGACCATCTCGCGGGTGACCACCCAGAAGTACATGCACACGCCGCGCGGCATCTTCGAA
CTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAGGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCGGAGAATCCCGCCAAGCCGCTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCAAAGTACCGTGAATCCTTGTTGATCCCGCCATCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.866

100

0.486