Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   NL414_RS25900 Genome accession   NZ_CP117013
Coordinates   5214168..5215160 (-) Length   330 a.a.
NCBI ID   WP_000224462.1    Uniprot ID   -
Organism   Escherichia coli strain MLI114     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5209168..5220160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL414_RS25890 (NL414_025890) yieP 5212060..5212752 (+) 693 WP_001131177.1 FadR/GntR family transcriptional regulator -
  NL414_RS25895 (NL414_025895) mdtD 5212775..5214202 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  NL414_RS25900 (NL414_025900) cytR 5214168..5215160 (-) 993 WP_000224462.1 ribose operon transcriptional repressor RbsR Regulator
  NL414_RS25905 (NL414_025905) rbsK 5215164..5216093 (-) 930 WP_001361088.1 ribokinase -
  NL414_RS25910 (NL414_025910) rbsB 5216219..5217109 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  NL414_RS25915 (NL414_025915) rbsC 5217134..5218099 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  NL414_RS25920 (NL414_025920) rbsA 5218104..5219609 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  NL414_RS25925 (NL414_025925) rbsD 5219617..5220036 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36637.99 Da        Isoelectric Point: 5.2141

>NTDB_id=716134 NL414_RS25900 WP_000224462.1 5214168..5215160(-) (cytR) [Escherichia coli strain MLI114]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLLHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=716134 NL414_RS25900 WP_000224462.1 5214168..5215160(-) (cytR) [Escherichia coli strain MLI114]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCTGAACTGGTGCGTGGC
GTTGAACGCAGTTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCACGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATTACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGCTGTATCAGGCAGAGTTACAAGTTCCGCAGGA
TATTGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTAGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364