Detailed information NTG0716042

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NL413_RS21925
• Genome accession: NZ_CP117010
• Coordinates: 4403784..4404809 (+)
• Length: 341 a.a.
• NCBI ID: WP_231286592.1
• Uniprot ID: -
• Organism: Escherichia coli strain MLI110
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4398784..4409809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NL413_RS21905 (NL413_021890)	metJ	4399845..4400162 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NL413_RS21910 (NL413_021895)	yiiX	4400346..4400954 (+)	609	WP_135460384.1	YiiX family permuted papain-like enzyme	-
NL413_RS21915 (NL413_021900)	rpmE	4401015..4401227 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NL413_RS21920 (NL413_021905)	priA	4401430..4403628 (+)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
NL413_RS21925 (NL413_021910)	cytR	4403784..4404809 (+)	1026	WP_231286592.1	DNA-binding transcriptional regulator CytR	Regulator
NL413_RS21930 (NL413_021915)	ftsN	4404901..4405860 (+)	960	WP_000068828.1	cell division protein FtsN	-
NL413_RS21935 (NL413_021920)	hslV	4405953..4406483 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NL413_RS21940 (NL413_021925)	hslU	4406493..4407824 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NL413_RS21945 (NL413_021930)	menA	4407891..4408817 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NL413_RS21950 (NL413_021935)	rraA	4408910..4409395 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NL413_RS21955 (NL413_021940)	zapB	4409480..4409725 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37849.81 Da
• Isoelectric Point: 6.3842

>NTDB_id=716042 NL413_RS21925 WP_231286592.1 4403784..4404809(+) (cytR) [Escherichia coli strain MLI110]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYITRGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=716042 NL413_RS21925 WP_231286592.1 4403784..4404809(+) (cytR) [Escherichia coli strain MLI110]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTTCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCACCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.749	95.894	0.63