Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQ193_RS13420 Genome accession   NZ_CP102297
Coordinates   2981017..2982378 (-) Length   453 a.a.
NCBI ID   WP_025648642.1    Uniprot ID   A0AAE8FT28
Organism   Clostridium perfringens strain JXNC-DD     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2976017..2987378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ193_RS13400 (NQ193_13400) ispD 2977389..2978066 (-) 678 WP_003459324.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  NQ193_RS13405 (NQ193_13405) - 2978080..2979186 (-) 1107 WP_003459365.1 PIN/TRAM domain-containing protein -
  NQ193_RS13410 (NQ193_13410) - 2979498..2979899 (+) 402 WP_003459340.1 hypothetical protein -
  NQ193_RS13415 (NQ193_13415) disA 2979933..2980997 (-) 1065 WP_164807257.1 DNA integrity scanning diadenylate cyclase DisA -
  NQ193_RS13420 (NQ193_13420) radA 2981017..2982378 (-) 1362 WP_025648642.1 DNA repair protein RadA Machinery gene
  NQ193_RS13425 (NQ193_13425) nagB 2982629..2983357 (-) 729 WP_003459367.1 glucosamine-6-phosphate deaminase -
  NQ193_RS13430 (NQ193_13430) - 2983354..2984076 (-) 723 WP_003459300.1 GntR family transcriptional regulator -
  NQ193_RS13435 (NQ193_13435) - 2984276..2984440 (+) 165 WP_003459343.1 hypothetical protein -
  NQ193_RS13440 (NQ193_13440) - 2984534..2984761 (+) 228 WP_003452255.1 glutaredoxin family protein -
  NQ193_RS13445 (NQ193_13445) - 2984883..2986331 (-) 1449 WP_025648641.1 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase -
  NQ193_RS13450 (NQ193_13450) - 2986348..2986581 (-) 234 WP_003452243.1 glutaredoxin family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49832.60 Da        Isoelectric Point: 6.5314

>NTDB_id=716003 NQ193_RS13420 WP_025648642.1 2981017..2982378(-) (radA) [Clostridium perfringens strain JXNC-DD]
MAKVRSIYVCQNCGYETPKWMGKCPECNNWNTLVEEIRDTKSNQSSPKVERQIGELKKIKEIKSGEKERYDTGIGELNRV
LGGGLVKGSLTLISGDPGIGKSTLLLQTANNISKKYGKVLYVSGEESEEQIKIRGDRLKVDAEELYIVSETNLDVIEAYI
DKLEPAFIIIDSIQTIYREIVSSAPGSVSQVKECSNAVMRIAKGKNIPLFIVAHVTKQGDLAGPRVLEHMVDTVLSFEGE
RTEEFRILRTMKNRFGTTAEIGVFEMRGEGLMQVYDPSSMFLEDTSFNQEGSVVIGVMEGTRPILVEIQSLASETKAVMP
RRTSVGVENSRLSLILAVLEKKLRVPFYNTDVYVNVVGGLEIEGTTADLGIAISLVSSVKGKAASLEKLVVVGEVGLTGE
IRPISNCDRILNEAEKMGFLNAVVPYRSLEKLKGSKLNLIGVKTVREAIGKIF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=716003 NQ193_RS13420 WP_025648642.1 2981017..2982378(-) (radA) [Clostridium perfringens strain JXNC-DD]
GTGGCAAAGGTTAGAAGCATATATGTATGTCAAAATTGTGGATATGAAACACCTAAATGGATGGGAAAATGTCCAGAATG
TAATAATTGGAATACTTTAGTTGAAGAGATTAGAGATACTAAGAGTAATCAATCTTCTCCTAAGGTTGAAAGACAAATTG
GTGAGCTTAAAAAGATAAAAGAAATTAAATCAGGTGAAAAGGAAAGATATGATACTGGAATTGGTGAATTAAATAGAGTA
TTAGGTGGAGGACTTGTTAAGGGGTCGCTTACACTTATATCTGGTGACCCTGGAATAGGTAAATCTACACTTCTTTTACA
AACAGCCAATAATATTTCAAAAAAATATGGGAAAGTTTTATATGTTTCTGGAGAAGAATCAGAAGAACAAATAAAAATAA
GAGGAGACAGATTAAAAGTTGATGCAGAAGAACTTTATATAGTTTCCGAAACTAATCTTGATGTAATAGAAGCATATATA
GATAAACTTGAACCAGCTTTCATAATAATAGATTCAATACAAACAATTTATAGAGAAATAGTTTCTTCAGCACCAGGAAG
TGTTTCACAGGTTAAGGAATGCTCAAATGCTGTAATGAGAATTGCTAAAGGAAAAAATATTCCTTTATTTATAGTTGCTC
ACGTTACTAAGCAAGGGGATTTAGCAGGACCAAGAGTATTAGAACACATGGTGGATACCGTATTATCCTTTGAAGGGGAA
AGAACTGAAGAATTTAGAATATTAAGAACCATGAAAAATAGATTTGGTACTACGGCTGAAATAGGTGTTTTTGAAATGCG
TGGAGAGGGATTAATGCAGGTTTATGATCCATCTAGCATGTTCTTAGAGGACACTAGTTTTAATCAAGAAGGGTCAGTTG
TAATTGGAGTCATGGAAGGAACTAGACCTATTCTTGTGGAAATACAATCATTAGCATCTGAAACAAAAGCAGTTATGCCT
AGAAGAACCTCTGTAGGAGTAGAAAATTCAAGGTTAAGTTTAATATTAGCTGTATTAGAAAAAAAATTAAGAGTTCCTTT
TTATAATACTGATGTTTATGTAAATGTAGTAGGAGGACTTGAAATAGAAGGTACTACAGCAGACTTAGGAATTGCTATTT
CACTTGTATCCTCTGTTAAAGGTAAGGCAGCTAGCTTAGAAAAATTAGTTGTTGTAGGCGAGGTTGGGTTAACAGGTGAA
ATAAGACCAATATCAAATTGTGACAGAATATTAAATGAAGCAGAAAAAATGGGATTTTTAAATGCAGTTGTTCCTTATAG
AAGTTTAGAAAAATTAAAGGGAAGTAAATTAAACCTTATAGGAGTAAAAACTGTAAGGGAAGCAATAGGAAAGATATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

100

0.501
  radA Streptococcus pneumoniae Rx1

47.577

100

0.477
  radA Streptococcus pneumoniae D39

47.577

100

0.477
  radA Streptococcus pneumoniae R6

47.577

100

0.477
  radA Streptococcus pneumoniae TIGR4

47.577

100

0.477
  radA Streptococcus mitis NCTC 12261

47.357

100

0.475
  radA Streptococcus mitis SK321

47.357

100

0.475