Detailed information NTG0715993

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: NL413_RS05570
• Genome accession: NZ_CP117010
• Coordinates: 1014925..1015917 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MLI110
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1009925..1020917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NL413_RS05540 (NL413_005535)	ispD	1009986..1010696 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
NL413_RS05545 (NL413_005540)	ispF	1010696..1011175 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
NL413_RS05550 (NL413_005545)	truD	1011172..1012221 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
NL413_RS05555 (NL413_005550)	surE	1012202..1012963 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
NL413_RS05560 (NL413_005555)	pcm	1012957..1013583 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
NL413_RS05565 (NL413_005560)	nlpD	1013768..1014862 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
NL413_RS05570 (NL413_005565)	rpoS	1014925..1015917 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
NL413_RS05575 (NL413_005570)	ygbN	1016011..1017375 (-)	1365	WP_061350705.1	GntP family transporter	-
NL413_RS05580 (NL413_005575)	ygbM	1017464..1018240 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
NL413_RS05585 (NL413_005580)	ygbL	1018245..1018883 (-)	639	WP_001278994.1	aldolase	-
NL413_RS05590 (NL413_005585)	otnK	1018880..1020142 (-)	1263	WP_086676129.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=715993 NL413_RS05570 WP_000081550.1 1014925..1015917(+) (rpoS) [Escherichia coli strain MLI110]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=715993 NL413_RS05570 WP_000081550.1 1014925..1015917(+) (rpoS) [Escherichia coli strain MLI110]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715