Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQ490_RS14715 Genome accession   NZ_CP102293
Coordinates   3121981..3123381 (+) Length   466 a.a.
NCBI ID   WP_040917567.1    Uniprot ID   -
Organism   Subdoligranulum variabile strain DSM 15176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3116981..3128381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ490_RS14695 (NQ490_14695) - 3117233..3118078 (+) 846 WP_007046390.1 NAD(+)/NADH kinase -
  NQ490_RS14700 (NQ490_14700) - 3118075..3118545 (+) 471 WP_007046389.1 arginine repressor -
  NQ490_RS14705 (NQ490_14705) recN 3118579..3120246 (+) 1668 WP_007046388.1 DNA repair protein RecN -
  NQ490_RS14710 (NQ490_14710) tyrS 3120622..3121842 (+) 1221 WP_007046387.1 tyrosine--tRNA ligase -
  NQ490_RS14715 (NQ490_14715) radA 3121981..3123381 (+) 1401 WP_040917567.1 DNA repair protein RadA Machinery gene
  NQ490_RS14720 (NQ490_14720) - 3123391..3124245 (+) 855 WP_007046385.1 enhanced serine sensitivity protein SseB C-terminal domain-containing protein -
  NQ490_RS14725 (NQ490_14725) - 3124242..3125171 (+) 930 WP_007046384.1 hypothetical protein -
  NQ490_RS14730 (NQ490_14730) - 3125321..3126970 (-) 1650 WP_007046383.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50442.42 Da        Isoelectric Point: 7.7281

>NTDB_id=715982 NQ490_RS14715 WP_040917567.1 3121981..3123381(+) (radA) [Subdoligranulum variabile strain DSM 15176]
MPKDKLKTVYVCTQCGETSPRWLGRCPSCGAWNTMTEDVVAEPVKYSSSRGGATPRVPGQTTLTPHKLKNISTTEEKSRI
ITGISELDRVLGGGIVIGSVILIGGEPGIGKSTILLQLCGEVSKTKNVLYVTGEESVRQIKLRAVRLDVPQENISLVAES
DVDEICGLIESMKPDLVVIDSIQTMRCTDIASSSGTVSQVKESTARFLNVAKTLEIPTFIVGHVNKDGAIAGPKVMEHIV
DTVLYFEGDKTLPYRVLRAVKNRYGSTNEIGMFDMTGRGLAQIDNPSQVMLEGRPLGISGTCVACVMEGTRPVLSEIQAL
VTKTSFPSPRRTASGFDYNRMYLLLAVLEKRAGYSFANQDVYINIVGGLKLDETACDLPTCMALASSLLDLPIGEKTFAV
GEVGLGGEIRSVPHLETRLREAQRVGFDTAIVPKHNLKLIDPAQFPGLKLVGVSYLREAINTIKLK

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=715982 NQ490_RS14715 WP_040917567.1 3121981..3123381(+) (radA) [Subdoligranulum variabile strain DSM 15176]
ATGCCCAAAGACAAACTGAAAACCGTTTATGTCTGTACCCAGTGCGGCGAGACCAGTCCGCGATGGCTGGGCCGGTGTCC
TTCCTGTGGAGCCTGGAATACCATGACGGAGGATGTTGTGGCGGAACCGGTCAAGTACTCTTCCTCACGGGGCGGGGCAA
CTCCGCGTGTTCCGGGGCAGACGACACTGACACCGCATAAGCTGAAAAATATCAGTACAACAGAAGAAAAAAGTCGAATC
ATTACTGGAATCAGTGAACTGGATCGGGTTCTGGGCGGCGGCATTGTCATTGGAAGTGTCATACTGATCGGCGGCGAGCC
GGGAATTGGTAAATCTACGATTCTGCTGCAGCTTTGCGGCGAAGTGAGCAAGACCAAAAATGTGCTATATGTGACAGGCG
AGGAATCTGTACGGCAGATTAAATTGCGCGCGGTACGCCTGGATGTTCCACAGGAAAATATTTCTCTGGTGGCGGAGAGT
GATGTTGATGAAATTTGTGGGTTGATTGAATCCATGAAGCCGGATCTTGTGGTAATCGATTCGATCCAAACCATGCGGTG
CACAGACATCGCCTCTTCGTCCGGAACGGTCAGCCAGGTGAAAGAGAGCACGGCTCGTTTCCTGAACGTAGCCAAGACAC
TGGAAATTCCCACATTTATTGTGGGACATGTCAATAAAGATGGCGCTATTGCAGGCCCGAAGGTCATGGAACACATTGTG
GATACGGTACTTTATTTTGAAGGTGACAAGACTTTACCGTATCGGGTGTTGCGGGCTGTCAAAAACCGTTATGGATCAAC
GAATGAGATCGGCATGTTTGACATGACTGGTCGCGGGCTGGCCCAGATTGACAACCCGTCCCAGGTTATGCTGGAAGGTC
GTCCCCTGGGGATCAGCGGAACCTGCGTTGCCTGTGTGATGGAAGGCACTCGTCCGGTTTTGAGTGAGATCCAGGCGCTG
GTCACCAAAACGAGTTTTCCCAGCCCGCGCCGGACGGCAAGTGGTTTCGACTACAATCGGATGTATTTGCTATTGGCTGT
GCTGGAAAAACGTGCCGGATATTCCTTTGCCAATCAGGATGTGTATATCAATATCGTGGGCGGGCTGAAACTGGATGAAA
CCGCCTGTGATTTGCCTACGTGTATGGCATTGGCATCCAGTTTGCTGGATCTGCCGATCGGGGAAAAAACCTTTGCGGTC
GGAGAAGTGGGGCTTGGCGGCGAAATTCGCAGTGTACCACATCTGGAAACTCGTCTGCGGGAGGCGCAGCGTGTGGGCTT
TGATACCGCCATTGTTCCCAAACACAATCTAAAGCTGATTGATCCGGCGCAGTTCCCGGGATTAAAGCTAGTAGGGGTTT
CTTATCTGCGCGAAGCCATCAATACGATAAAACTGAAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(78-228)

Subunit ChlI of Mg-chelatase (ChlI)

(351-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.13

98.712

0.485
  radA Streptococcus pneumoniae Rx1

47.826

98.712

0.472
  radA Streptococcus pneumoniae R6

47.826

98.712

0.472
  radA Streptococcus pneumoniae TIGR4

47.826

98.712

0.472
  radA Streptococcus pneumoniae D39

47.826

98.712

0.472
  radA Streptococcus mitis NCTC 12261

47.93

98.498

0.472
  radA Streptococcus mitis SK321

47.93

98.498

0.472