Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQ502_RS15315 Genome accession   NZ_CP102290
Coordinates   3226235..3227596 (+) Length   453 a.a.
NCBI ID   WP_028530308.1    Uniprot ID   -
Organism   Ruminococcus gauvreauii strain DSM 19829     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3221235..3232596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ502_RS15300 (NQ502_15300) - 3221290..3223743 (+) 2454 WP_028529071.1 ATP-dependent Clp protease ATP-binding subunit -
  NQ502_RS15305 (NQ502_15305) - 3223841..3224254 (+) 414 WP_028529072.1 hypothetical protein -
  NQ502_RS15310 (NQ502_15310) ltrA 3224711..3226129 (+) 1419 WP_260046563.1 group II intron reverse transcriptase/maturase -
  NQ502_RS15315 (NQ502_15315) radA 3226235..3227596 (+) 1362 WP_028530308.1 DNA repair protein RadA Machinery gene
  NQ502_RS15320 (NQ502_15320) cooS 3227704..3229587 (+) 1884 WP_028530309.1 anaerobic carbon-monoxide dehydrogenase catalytic subunit -
  NQ502_RS15325 (NQ502_15325) - 3229600..3230052 (+) 453 WP_028530310.1 4Fe-4S dicluster domain-containing protein -
  NQ502_RS15330 (NQ502_15330) - 3230049..3231269 (+) 1221 WP_028530311.1 NAD(P)/FAD-dependent oxidoreductase -
  NQ502_RS15335 (NQ502_15335) - 3231477..3232559 (+) 1083 WP_028530312.1 NlpC/P60 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49272.98 Da        Isoelectric Point: 7.7658

>NTDB_id=715943 NQ502_RS15315 WP_028530308.1 3226235..3227596(+) (radA) [Ruminococcus gauvreauii strain DSM 19829]
MAKARKTIFFCQNCGYESAKWMGQCPGCREWNTLVEEPVAERTSKKAAGRKNHVEPVQLSRIQTETEERLHTNIGELDRV
LGGGIVQGSMTLVGGDPGIGKSTLLLQVCRKIAEQEKKVLYISGEESLAQIKLRAQRIGSFNEYMLLLCETNLADIRSAV
EQQKPDVLIIDSIQTMYDEEVSSAPGSVSQVRESTAALMQIAKGMGVSVFIVGHVTKDGNVAGPRVLEHMVDTVLYFEGD
RHASYRILRSVKNRFGSTNEIGVFEMCQTGLAEVKNPSEFMLNGKPKGASGSVVACSMEGTRPILIEVQALVCRSNFGIP
RRTAAGTDFNRVNLLMAVLEKRGGMNLSDSDAYVNIAGGIKMTEPAIDLGILLAIASSYRDIVIPESVVAFGEVGLSGEV
RAVSMALQRVQEAKKLGFETVILPKVCRSAVKEVTGIRLIFVDNIKDAISAIK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=715943 NQ502_RS15315 WP_028530308.1 3226235..3227596(+) (radA) [Ruminococcus gauvreauii strain DSM 19829]
ATGGCGAAAGCGAGAAAGACTATATTTTTCTGCCAGAATTGTGGATATGAATCCGCAAAATGGATGGGACAGTGCCCCGG
ATGCAGAGAATGGAATACACTGGTGGAAGAACCGGTGGCAGAACGGACGTCAAAAAAAGCGGCTGGCAGAAAGAATCATG
TGGAACCGGTACAGCTGTCACGGATTCAGACGGAGACAGAGGAACGTCTTCATACGAATATCGGAGAGCTGGACCGGGTT
CTCGGAGGAGGAATCGTACAGGGTTCGATGACTCTGGTGGGCGGAGACCCGGGAATCGGCAAATCCACACTGCTTCTTCA
GGTATGCAGGAAGATTGCAGAACAGGAAAAGAAAGTATTGTATATCTCGGGTGAGGAGTCTCTTGCACAGATTAAACTGC
GCGCGCAGAGAATCGGCAGTTTTAATGAATATATGCTGCTGCTGTGTGAGACAAACCTGGCAGACATCAGGAGCGCCGTG
GAACAGCAGAAACCGGATGTCCTGATCATTGATTCCATACAGACTATGTACGATGAGGAGGTGAGTTCAGCTCCCGGCAG
TGTTTCACAGGTTCGCGAATCGACGGCCGCGCTGATGCAGATTGCGAAAGGTATGGGTGTTTCTGTATTTATCGTCGGAC
ATGTGACGAAGGACGGAAATGTGGCAGGACCGCGGGTGCTGGAACACATGGTAGATACCGTCCTGTATTTCGAAGGTGAT
CGTCATGCTTCCTACCGTATCCTGCGCAGTGTGAAGAACCGTTTTGGCTCGACGAATGAAATCGGAGTATTTGAGATGTG
TCAGACGGGTCTCGCAGAGGTAAAAAATCCTTCGGAGTTTATGCTGAACGGTAAACCAAAGGGAGCATCGGGGTCAGTTG
TGGCATGTTCCATGGAGGGGACCAGACCGATACTGATCGAGGTCCAGGCGCTGGTTTGCAGGAGTAATTTCGGAATACCA
AGAAGGACGGCGGCGGGAACGGATTTTAACCGCGTGAATCTTTTGATGGCCGTTCTGGAAAAACGGGGCGGCATGAACCT
CTCTGACAGTGATGCATACGTCAATATAGCCGGAGGAATCAAGATGACAGAACCGGCGATCGACCTGGGCATTCTCCTCG
CGATTGCTTCGAGTTACCGTGATATTGTGATTCCGGAAAGCGTAGTTGCTTTTGGCGAAGTAGGGCTGAGCGGGGAAGTA
CGGGCAGTCAGCATGGCGCTTCAGCGTGTTCAGGAGGCGAAAAAACTAGGATTCGAGACGGTGATCCTGCCCAAAGTATG
CAGGTCCGCAGTGAAAGAGGTGACGGGGATCCGTTTGATCTTTGTGGATAATATAAAAGATGCAATATCTGCCATAAAAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.629

100

0.556
  radA Streptococcus mitis NCTC 12261

52.097

100

0.521
  radA Streptococcus mitis SK321

52.097

100

0.521
  radA Streptococcus pneumoniae Rx1

52.097

100

0.521
  radA Streptococcus pneumoniae D39

52.097

100

0.521
  radA Streptococcus pneumoniae R6

52.097

100

0.521
  radA Streptococcus pneumoniae TIGR4

52.097

100

0.521