Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NL412_RS17350 Genome accession   NZ_CP117008
Coordinates   3311543..3312172 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain MLI109     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3306543..3317172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL412_RS17335 (NL412_017330) helD 3306785..3308839 (-) 2055 WP_001550921.1 DNA helicase IV -
  NL412_RS17340 (NL412_017335) yccF 3308962..3309408 (+) 447 WP_001261235.1 YccF domain-containing protein -
  NL412_RS17345 (NL412_017340) yccS 3309418..3311580 (+) 2163 WP_001550920.1 YccS family putative transporter -
  NL412_RS17350 (NL412_017345) sxy/tfoX 3311543..3312172 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  NL412_RS17355 (NL412_017350) sulA 3312391..3312900 (+) 510 WP_255073348.1 SOS-induced cell division inhibitor SulA -
  NL412_RS17360 (NL412_017355) ompA 3313257..3314309 (+) 1053 WP_000750418.1 porin OmpA -
  NL412_RS17365 (NL412_017360) matP 3314384..3314836 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  NL412_RS17370 (NL412_017365) ycbZ 3315022..3316782 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=715939 NL412_RS17350 WP_000839153.1 3311543..3312172(-) (sxy/tfoX) [Escherichia coli strain MLI109]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=715939 NL412_RS17350 WP_000839153.1 3311543..3312172(-) (sxy/tfoX) [Escherichia coli strain MLI109]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1