Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | NQ522_RS04600 | Genome accession | NZ_CP102289 |
| Coordinates | 988191..989576 (+) | Length | 461 a.a. |
| NCBI ID | WP_015559364.1 | Uniprot ID | A0A1Q6SES9 |
| Organism | Roseburia intestinalis strain L1 82 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 983191..994576
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQ522_RS04585 (NQ522_04585) | - | 983678..984088 (+) | 411 | WP_015559362.1 | hypothetical protein | - |
| NQ522_RS04590 (NQ522_04590) | - | 984246..984845 (+) | 600 | WP_006856438.1 | hypothetical protein | - |
| NQ522_RS04595 (NQ522_04595) | - | 984911..988063 (+) | 3153 | WP_006856437.1 | fibronectin type III domain-containing protein | - |
| NQ522_RS04600 (NQ522_04600) | radA | 988191..989576 (+) | 1386 | WP_015559364.1 | DNA repair protein RadA | Machinery gene |
Sequence
Protein
Download Length: 461 a.a. Molecular weight: 50029.86 Da Isoelectric Point: 6.4983
>NTDB_id=715919 NQ522_RS04600 WP_015559364.1 988191..989576(+) (radA) [Roseburia intestinalis strain L1 82]
MPKGKTTVFFCQECGYESSKWMGQCPACKEWNTFVEEMIDKKSAAKGGRVAAKAAEAKNVPLSQIEMTQDKRMSTDMKEL
DRVLGGGIVQGSLVLVGGDPGIGKSTLLLQVCRNLSEKGVRVLYISGEESLQQIKIRAERIGTFGDSLTLLCETNLDTIK
TVIDREKPQIVIIDSIQTMYNEEVSSAPGSVSQVRESTGVFMQIAKGMGISIFIVGHVTKEGVVAGPRVLEHMVDTVLYF
EGDRHAAYRILRGVKNRFGSTNEIGVFEMRQNGLMEVENPSEYMLSGKPEGASGSVVACSMEGTRPILVEVQALVCHSNF
GIPRRTAAGTDFNRVNLLMAVLEKRLGLKLGDCDAYVNIAGGVKMNEPAIDLGIVLAIISSYRENPINEKTICFGEVGLS
GEVRAVSMAEQRVTEAKKLGFDECILPQVSLDSMKDSGSVPKGIRLTGVRSVKDAMDAILK
MPKGKTTVFFCQECGYESSKWMGQCPACKEWNTFVEEMIDKKSAAKGGRVAAKAAEAKNVPLSQIEMTQDKRMSTDMKEL
DRVLGGGIVQGSLVLVGGDPGIGKSTLLLQVCRNLSEKGVRVLYISGEESLQQIKIRAERIGTFGDSLTLLCETNLDTIK
TVIDREKPQIVIIDSIQTMYNEEVSSAPGSVSQVRESTGVFMQIAKGMGISIFIVGHVTKEGVVAGPRVLEHMVDTVLYF
EGDRHAAYRILRGVKNRFGSTNEIGVFEMRQNGLMEVENPSEYMLSGKPEGASGSVVACSMEGTRPILVEVQALVCHSNF
GIPRRTAAGTDFNRVNLLMAVLEKRLGLKLGDCDAYVNIAGGVKMNEPAIDLGIVLAIISSYRENPINEKTICFGEVGLS
GEVRAVSMAEQRVTEAKKLGFDECILPQVSLDSMKDSGSVPKGIRLTGVRSVKDAMDAILK
Nucleotide
Download Length: 1386 bp
>NTDB_id=715919 NQ522_RS04600 WP_015559364.1 988191..989576(+) (radA) [Roseburia intestinalis strain L1 82]
ATGCCGAAGGGAAAAACAACAGTATTTTTTTGTCAGGAATGTGGTTACGAATCATCAAAGTGGATGGGACAGTGTCCTGC
ATGTAAGGAATGGAATACATTTGTTGAGGAGATGATCGATAAAAAAAGTGCAGCAAAAGGCGGCAGGGTAGCGGCAAAAG
CGGCAGAGGCGAAGAACGTTCCGCTCTCACAGATCGAGATGACACAGGACAAACGCATGTCGACGGATATGAAAGAGCTT
GACCGTGTACTTGGCGGCGGAATCGTACAGGGATCTTTAGTGTTAGTGGGCGGTGATCCGGGAATCGGTAAATCAACACT
GCTTTTGCAGGTATGCCGGAATTTATCGGAGAAAGGTGTGCGCGTATTATATATATCCGGAGAGGAATCCCTGCAGCAGA
TCAAAATAAGGGCAGAACGTATCGGAACCTTTGGCGATTCGCTGACACTTTTATGTGAAACGAACTTAGACACGATAAAA
ACGGTGATTGACCGGGAAAAACCGCAGATCGTGATCATAGATTCCATACAGACCATGTATAACGAAGAAGTTTCCTCTGC
ACCGGGCAGCGTATCACAGGTGCGGGAATCCACAGGGGTATTTATGCAGATTGCAAAGGGGATGGGAATTTCCATCTTTA
TTGTCGGTCATGTGACGAAAGAGGGCGTGGTTGCGGGTCCGAGAGTTTTAGAACACATGGTGGATACGGTACTCTATTTT
GAGGGGGACAGGCATGCGGCATACCGTATACTGCGCGGTGTCAAAAACAGGTTCGGCTCAACGAATGAGATTGGCGTGTT
TGAGATGAGACAGAACGGACTGATGGAAGTGGAAAATCCTTCGGAATACATGCTGAGCGGGAAACCGGAAGGTGCATCCG
GTTCGGTTGTTGCGTGTTCTATGGAAGGAACCAGACCGATTCTGGTGGAAGTACAGGCATTAGTCTGCCACAGTAATTTT
GGAATCCCGCGGAGAACGGCTGCAGGCACCGATTTTAACAGGGTAAATCTTCTGATGGCAGTACTTGAAAAAAGGCTGGG
ATTAAAACTTGGAGACTGTGACGCTTATGTGAATATCGCGGGCGGCGTAAAAATGAATGAGCCAGCGATCGATCTTGGCA
TTGTGCTTGCCATTATATCCAGTTACCGTGAAAACCCGATCAATGAGAAGACGATCTGTTTCGGAGAAGTGGGCTTAAGC
GGAGAAGTGCGTGCCGTCAGTATGGCAGAGCAGCGCGTGACAGAAGCAAAAAAACTTGGATTTGATGAATGCATTCTGCC
ACAGGTCAGCCTGGATTCCATGAAGGACAGTGGATCTGTGCCAAAGGGAATCCGCCTGACTGGTGTGAGGTCAGTGAAAG
ATGCGATGGATGCGATATTGAAATAA
ATGCCGAAGGGAAAAACAACAGTATTTTTTTGTCAGGAATGTGGTTACGAATCATCAAAGTGGATGGGACAGTGTCCTGC
ATGTAAGGAATGGAATACATTTGTTGAGGAGATGATCGATAAAAAAAGTGCAGCAAAAGGCGGCAGGGTAGCGGCAAAAG
CGGCAGAGGCGAAGAACGTTCCGCTCTCACAGATCGAGATGACACAGGACAAACGCATGTCGACGGATATGAAAGAGCTT
GACCGTGTACTTGGCGGCGGAATCGTACAGGGATCTTTAGTGTTAGTGGGCGGTGATCCGGGAATCGGTAAATCAACACT
GCTTTTGCAGGTATGCCGGAATTTATCGGAGAAAGGTGTGCGCGTATTATATATATCCGGAGAGGAATCCCTGCAGCAGA
TCAAAATAAGGGCAGAACGTATCGGAACCTTTGGCGATTCGCTGACACTTTTATGTGAAACGAACTTAGACACGATAAAA
ACGGTGATTGACCGGGAAAAACCGCAGATCGTGATCATAGATTCCATACAGACCATGTATAACGAAGAAGTTTCCTCTGC
ACCGGGCAGCGTATCACAGGTGCGGGAATCCACAGGGGTATTTATGCAGATTGCAAAGGGGATGGGAATTTCCATCTTTA
TTGTCGGTCATGTGACGAAAGAGGGCGTGGTTGCGGGTCCGAGAGTTTTAGAACACATGGTGGATACGGTACTCTATTTT
GAGGGGGACAGGCATGCGGCATACCGTATACTGCGCGGTGTCAAAAACAGGTTCGGCTCAACGAATGAGATTGGCGTGTT
TGAGATGAGACAGAACGGACTGATGGAAGTGGAAAATCCTTCGGAATACATGCTGAGCGGGAAACCGGAAGGTGCATCCG
GTTCGGTTGTTGCGTGTTCTATGGAAGGAACCAGACCGATTCTGGTGGAAGTACAGGCATTAGTCTGCCACAGTAATTTT
GGAATCCCGCGGAGAACGGCTGCAGGCACCGATTTTAACAGGGTAAATCTTCTGATGGCAGTACTTGAAAAAAGGCTGGG
ATTAAAACTTGGAGACTGTGACGCTTATGTGAATATCGCGGGCGGCGTAAAAATGAATGAGCCAGCGATCGATCTTGGCA
TTGTGCTTGCCATTATATCCAGTTACCGTGAAAACCCGATCAATGAGAAGACGATCTGTTTCGGAGAAGTGGGCTTAAGC
GGAGAAGTGCGTGCCGTCAGTATGGCAGAGCAGCGCGTGACAGAAGCAAAAAAACTTGGATTTGATGAATGCATTCTGCC
ACAGGTCAGCCTGGATTCCATGAAGGACAGTGGATCTGTGCCAAAGGGAATCCGCCTGACTGGTGTGAGGTCAGTGAAAG
ATGCGATGGATGCGATATTGAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
57.974 |
100 |
0.584 |
| radA | Streptococcus mitis NCTC 12261 |
53.913 |
99.783 |
0.538 |
| radA | Streptococcus pneumoniae Rx1 |
53.696 |
99.783 |
0.536 |
| radA | Streptococcus pneumoniae D39 |
53.696 |
99.783 |
0.536 |
| radA | Streptococcus pneumoniae R6 |
53.696 |
99.783 |
0.536 |
| radA | Streptococcus pneumoniae TIGR4 |
53.696 |
99.783 |
0.536 |
| radA | Streptococcus mitis SK321 |
53.478 |
99.783 |
0.534 |