Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQ544_RS04895 Genome accession   NZ_CP102288
Coordinates   1185878..1187362 (-) Length   494 a.a.
NCBI ID   WP_006846475.1    Uniprot ID   -
Organism   Segatella copri DSM 18205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1180878..1192362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ544_RS04875 (NQ544_04875) - 1182181..1182471 (+) 291 WP_006846479.1 HU family DNA-binding protein -
  NQ544_RS04880 (NQ544_04880) - 1182468..1183907 (+) 1440 WP_006846478.1 HU family DNA-binding protein -
  NQ544_RS04885 (NQ544_04885) - 1183986..1185110 (-) 1125 WP_006846477.1 TlpA disulfide reductase family protein -
  NQ544_RS04890 (NQ544_04890) queC 1185186..1185839 (-) 654 WP_006846476.1 7-cyano-7-deazaguanine synthase QueC -
  NQ544_RS04895 (NQ544_04895) radA 1185878..1187362 (-) 1485 WP_006846475.1 DNA repair protein RadA Machinery gene
  NQ544_RS04900 (NQ544_04900) pgk 1187686..1188933 (+) 1248 WP_006846474.1 phosphoglycerate kinase -
  NQ544_RS04905 (NQ544_04905) - 1189173..1190867 (+) 1695 WP_006846472.1 putative transporter -
  NQ544_RS04910 (NQ544_04910) - 1191091..1192119 (+) 1029 WP_006846471.1 OadG family protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 53827.77 Da        Isoelectric Point: 6.6163

>NTDB_id=715909 NQ544_RS04895 WP_006846475.1 1185878..1187362(-) (radA) [Segatella copri DSM 18205]
MAKDKIAFVCSNCGQESAKWMGKCPSCGQWNTFKEIRIAADSGSQAAKNAVMTMRHGGAATMFGGQHSEHDAAPMKLRDI
SAIDEPRIDMRDEELNRVLGGGMVPGSITLLGGEPGIGKSTLTLQTILNMTDRRILYVSGEESAHQIKLRADRLAKGQAM
LREGSSADTLKTASLSSEGAFDHITVLCETQLEKIFSHIQEVAPQLIVIDSIQTIAAEEVDSSPGSVSQVRECAASLLRF
AKTSGIPVILIGHINKEGTLAGPKILEHIVDTVIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMMQGGLRQVSNPSELL
LTEDHDGLSGVAISAAIEGVRPFLVETQALVSTAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFLNIAGGLR
VTDPAMDLSVLAAVLSSNVDTPIEQGWCMAGEVGLSGEVRPVSRIEQRIAEAEKLGFQHIIIPKYNNHGFDHKKYKIEIH
PVRKVEEAFRCLFG

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=715909 NQ544_RS04895 WP_006846475.1 1185878..1187362(-) (radA) [Segatella copri DSM 18205]
ATGGCGAAAGATAAGATTGCTTTTGTGTGCAGCAATTGCGGACAGGAAAGTGCCAAATGGATGGGCAAATGTCCTAGCTG
CGGACAATGGAATACATTTAAGGAAATTCGTATTGCTGCTGATTCCGGATCGCAGGCTGCGAAGAATGCCGTAATGACCA
TGCGTCATGGTGGAGCTGCCACGATGTTTGGCGGGCAGCACAGCGAGCACGACGCTGCGCCGATGAAACTTCGCGATATT
TCTGCGATTGATGAACCGCGCATCGATATGAGGGACGAGGAGCTGAACCGTGTGCTGGGTGGCGGAATGGTTCCTGGCAG
CATTACGCTCCTGGGCGGTGAACCGGGAATCGGTAAGAGTACGCTCACCTTGCAGACTATTCTGAACATGACTGACCGCC
GCATCCTGTATGTGAGCGGAGAGGAAAGTGCTCATCAGATTAAACTCCGTGCTGACCGGTTGGCTAAAGGACAGGCGATG
CTCAGAGAGGGTTCTTCTGCAGACACTCTGAAAACGGCTTCTCTTTCATCAGAAGGAGCCTTTGATCATATTACGGTTCT
CTGTGAAACGCAGTTGGAGAAAATCTTCAGTCATATTCAGGAAGTGGCTCCACAGCTGATAGTTATAGATTCTATCCAAA
CCATTGCTGCGGAAGAAGTAGACAGTTCGCCGGGTTCTGTTTCCCAAGTTCGCGAGTGTGCAGCCTCCCTGCTCCGATTT
GCCAAGACGAGTGGCATTCCGGTTATTCTGATAGGACATATTAATAAGGAGGGAACGCTTGCCGGACCAAAGATTCTGGA
GCACATCGTAGATACGGTGATTCAGTTTGAGGGCGACCAGCATTACATGTACCGCATCTTGAGAAGCATCAAAAACCGAT
TCGGAAGTACTTCTGAGTTGGGAATCTACGAGATGATGCAAGGCGGACTCCGACAGGTGAGCAATCCTTCGGAGTTGCTG
CTTACTGAAGATCATGACGGGCTTTCGGGTGTTGCCATCAGTGCTGCCATTGAGGGTGTACGCCCGTTCCTGGTGGAAAC
GCAGGCTTTGGTTTCAACAGCAGCCTATGGAACTCCGCAGCGTTCGGCAACTGGTTTTGACCAGCGCCGTTTGAACATGC
TCCTGGCGGTTCTAGAGAAACGTGTGGGGTTCAAGCTGATGCAGAAGGACGTGTTCCTGAATATTGCCGGAGGATTGAGA
GTAACCGATCCTGCCATGGACTTGAGTGTGTTGGCAGCCGTATTGAGCAGCAATGTTGACACGCCTATCGAGCAAGGTTG
GTGTATGGCAGGCGAGGTAGGTCTGAGCGGTGAAGTCCGTCCGGTGAGCCGCATCGAGCAGCGTATTGCTGAGGCTGAAA
AACTGGGATTCCAGCACATCATCATCCCGAAGTACAACAATCATGGTTTCGACCATAAGAAATATAAGATAGAAATTCAT
CCCGTAAGGAAGGTGGAAGAAGCATTCCGCTGCCTGTTCGGGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(377-466)

AAA domain (AAA_25)

(84-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.791

100

0.482
  radA Streptococcus pneumoniae Rx1

43.927

100

0.439
  radA Streptococcus pneumoniae D39

43.927

100

0.439
  radA Streptococcus pneumoniae R6

43.927

100

0.439
  radA Streptococcus pneumoniae TIGR4

43.927

100

0.439
  radA Streptococcus mitis NCTC 12261

43.927

100

0.439
  radA Streptococcus mitis SK321

43.725

100

0.437