Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   URS_RS11915 Genome accession   NZ_AP018824
Coordinates   2541236..2542024 (+) Length   262 a.a.
NCBI ID   WP_227546592.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain M3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2536236..2547024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS11885 (URS_2465) - 2536847..2537815 (+) 969 WP_004989450.1 DNA polymerase III subunit delta' -
  URS_RS11890 (URS_2466) - 2537828..2538169 (+) 342 WP_004989449.1 PilZ domain-containing protein -
  URS_RS11895 (URS_2467) - 2538186..2538959 (+) 774 WP_004989446.1 TatD family hydrolase -
  URS_RS11900 (URS_2468) - 2539003..2539611 (+) 609 WP_004989445.1 TetR/AcrR family transcriptional regulator -
  URS_RS11905 (URS_2469) - 2539784..2540359 (+) 576 WP_035245727.1 type II secretion system protein -
  URS_RS11910 gspI 2540346..2540969 (+) 624 WP_126624345.1 type II secretion system minor pseudopilin GspI -
  URS_RS11915 (URS_2471) xcpW 2541236..2542024 (+) 789 WP_227546592.1 GspJ family type II secretion system protein Machinery gene
  URS_RS11920 (URS_2472) gspK 2542030..2542995 (+) 966 WP_126624346.1 type II secretion system minor pseudopilin GspK -
  URS_RS11925 (URS_2473) - 2543157..2543753 (+) 597 WP_004989429.1 6-carboxytetrahydropterin synthase -
  URS_RS11930 (URS_2474) ung 2543801..2544514 (+) 714 WP_004989427.1 uracil-DNA glycosylase -
  URS_RS11935 (URS_2475) - 2544511..2545635 (+) 1125 WP_004989425.1 enoyl-CoA hydratase/isomerase family protein -
  URS_RS11940 (URS_2476) tadA 2545639..2546160 (+) 522 WP_004989424.1 tRNA adenosine(34) deaminase TadA -
  URS_RS11945 (URS_2477) - 2546273..2546710 (+) 438 WP_026039912.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29404.40 Da        Isoelectric Point: 9.2430

>NTDB_id=71589 URS_RS11915 WP_227546592.1 2541236..2542024(+) (xcpW) [Acinetobacter ursingii strain M3]
MLLRLSVARLKPRDSKHSSSPCAAAKRCFANRCSGFTLVELLVAIAIFAVLSALGWKVFDYLIKTKDRNAQHEEQLFILQ
DAYQQILRDTLQIIPLTANMNGQMRPALSLNNNVLQFSKAGVTDPLGQGVSPYERIEYRYDASQKVVYRLKYSDLNLPNS
AQPQSSILLKNVEQFQINVLNPQALNQWPDASLDFTQTQNLKLLPAGLKINVTMAGTEYEWIYSLLDTKAIVLKQQQNDA
SSNNNNSTNNTNHNSTNQTGQN

Nucleotide


Download         Length: 789 bp        

>NTDB_id=71589 URS_RS11915 WP_227546592.1 2541236..2542024(+) (xcpW) [Acinetobacter ursingii strain M3]
TTGCTTCTCAGATTGAGCGTTGCTCGATTAAAACCTCGCGACTCGAAGCATAGCTCCTCACCTTGCGCAGCGGCAAAACG
ATGTTTTGCTAATCGCTGCTCAGGATTTACGTTGGTTGAGCTTTTGGTCGCGATTGCGATATTTGCAGTATTGTCTGCAT
TAGGTTGGAAAGTTTTTGATTATCTCATCAAGACTAAAGATCGAAATGCTCAGCACGAAGAGCAACTTTTTATTTTACAA
GACGCATATCAGCAAATTTTGCGAGATACTCTACAGATCATTCCACTTACGGCAAATATGAATGGGCAAATGCGTCCAGC
ATTATCACTGAATAATAACGTACTCCAGTTTAGCAAAGCTGGTGTGACTGATCCATTAGGGCAGGGGGTATCGCCCTATG
AGCGGATTGAGTATCGCTATGATGCTTCGCAGAAAGTAGTCTATCGCTTAAAATATTCAGATTTGAATTTACCCAATAGT
GCACAGCCTCAATCCAGTATCCTATTGAAAAATGTGGAACAGTTTCAAATTAATGTATTGAATCCTCAGGCTTTAAATCA
ATGGCCTGATGCAAGTTTAGATTTTACTCAGACTCAAAATTTAAAACTTCTGCCCGCAGGTTTAAAAATTAATGTCACCA
TGGCAGGAACTGAATATGAATGGATTTACAGCTTATTGGATACTAAAGCTATTGTTTTAAAGCAGCAACAAAATGATGCA
TCAAGCAACAATAATAATTCAACGAATAATACCAATCACAATTCCACTAATCAGACTGGACAGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(31-54)

Type II secretion system (T2SS), protein J (T2SSJ)

(88-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

64.423

79.389

0.511

Multiple sequence alignment