Detailed information NTG0715811

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NQ558_RS00250
• Genome accession: NZ_CP102282
• Coordinates: 61189..62547 (-)
• Length: 452 a.a.
• NCBI ID: WP_005359987.1
• Uniprot ID: -
• Organism: Eubacterium ventriosum strain ATCC 27560
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 56189..67547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQ558_RS00245 (NQ558_00245)	ileS	57354..60512 (-)	3159	WP_005359992.1	isoleucine--tRNA ligase	-
NQ558_RS00250 (NQ558_00250)	radA	61189..62547 (-)	1359	WP_005359987.1	DNA repair protein RadA	Machinery gene
NQ558_RS00255 (NQ558_00255)	-	62605..63018 (-)	414	WP_005359985.1	hypothetical protein	-
NQ558_RS00260 (NQ558_00260)	-	63096..65561 (-)	2466	WP_040446213.1	ATP-dependent Clp protease ATP-binding subunit	-
NQ558_RS00265 (NQ558_00265)	-	65622..67181 (-)	1560	WP_005359980.1	cadherin-like beta sandwich domain-containing protein	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49144.81 Da
• Isoelectric Point: 6.1834

>NTDB_id=715811 NQ558_RS00250 WP_005359987.1 61189..62547(-) (radA) [Eubacterium ventriosum strain ATCC 27560]
MAKSKKTVFFCKECGYESSKWLGQCPGCKEVGTFVEEPMGAKTNNNIRRGLINNKPVTINQVTADDEERITTGFGELDRV
LGGGVVPGGLILVGGDPGIGKSTLLLQVCRNMSNNGKKILYISGEESLKQIKLRANRMGQFSDNLSLLSETSLDIIESVI
LETKPDAVVIDSIQTMLREDIGSAPGSVSQVRESTNFLMQLAKGNTIPIFIVGHVTKEGVVAGPRVLEHMVDTVLYFEGD
RHAAYRIIRGVKNRFGSTNEIGVFEMSSEGLREVLNPSEFMLDGRPEDASGSVVACLMEGTRPILVEIQALISHTNFGMP
RRTAVGTDYNRVNLLMAVIEKRIGVQMCDYDAYVNIAGGMKINEPALDLALVMALISSFKNRVIDPKTIVFGEVGLAGEV
RAVSQADKRVQEAKKLGFTTCIMPAVSKKNLTEITGINIIGVNNIKEAEELI

Nucleotide

• Length: 1359 bp

>NTDB_id=715811 NQ558_RS00250 WP_005359987.1 61189..62547(-) (radA) [Eubacterium ventriosum strain ATCC 27560]
ATGGCAAAATCAAAAAAGACGGTTTTCTTTTGCAAAGAGTGCGGTTACGAGTCAAGTAAATGGTTAGGACAGTGTCCGGG
ATGTAAAGAGGTAGGAACTTTTGTAGAAGAACCGATGGGGGCAAAGACCAACAATAACATTAGAAGGGGATTAATTAATA
ATAAACCGGTAACAATAAATCAGGTTACGGCAGATGATGAGGAGAGAATCACAACAGGTTTTGGAGAACTGGACAGAGTA
TTAGGAGGGGGAGTAGTTCCCGGCGGGCTAATACTTGTAGGCGGCGATCCGGGAATAGGAAAGTCCACATTACTTCTTCA
GGTATGTAGAAATATGTCAAATAATGGCAAGAAGATTTTATATATTTCAGGAGAAGAATCCCTTAAGCAGATTAAGCTTA
GAGCAAACAGAATGGGACAGTTTTCCGATAATTTAAGTCTTTTGTCAGAGACAAGCCTTGATATAATAGAGTCAGTTATT
TTAGAAACAAAACCTGATGCAGTAGTAATAGACTCAATACAGACTATGCTAAGAGAGGATATAGGCTCAGCTCCAGGCAG
TGTAAGTCAGGTTAGGGAGTCAACTAACTTTCTTATGCAGTTAGCTAAGGGTAATACCATTCCAATATTTATTGTAGGTC
ACGTAACCAAAGAAGGGGTTGTTGCAGGACCTAGGGTTTTGGAACATATGGTTGACACGGTTTTATATTTTGAAGGTGAC
AGACATGCAGCATATAGAATAATCCGAGGAGTTAAGAACCGTTTTGGTTCAACTAATGAAATTGGAGTATTTGAAATGAG
TTCAGAAGGACTTAGGGAAGTATTAAATCCGTCAGAATTTATGTTAGATGGAAGACCTGAGGATGCTTCAGGTTCAGTTG
TGGCATGTTTAATGGAAGGAACAAGACCGATTCTTGTAGAAATACAGGCATTAATATCCCACACCAACTTTGGAATGCCG
AGACGAACGGCGGTGGGAACAGACTATAACAGAGTTAATCTTTTAATGGCAGTTATCGAAAAAAGAATTGGAGTTCAGAT
GTGCGATTATGATGCATATGTTAATATAGCAGGTGGAATGAAAATCAATGAACCGGCATTAGACCTTGCATTAGTAATGG
CATTAATCAGTAGCTTTAAGAACAGAGTAATAGACCCAAAGACAATAGTTTTCGGTGAAGTAGGGCTTGCAGGAGAAGTA
AGAGCGGTATCACAGGCAGACAAAAGAGTACAGGAAGCTAAGAAACTTGGTTTTACAACGTGCATAATGCCTGCTGTATC
CAAGAAAAATCTTACAGAAATCACTGGAATCAATATAATTGGGGTAAATAATATAAAAGAAGCTGAAGAACTTATTTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (76-219)

• Subunit ChlI of Mg-chelatase (ChlI) (337-425)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	57.616	100	0.577
radA	Streptococcus mitis NCTC 12261	53.007	99.336	0.527
radA	Streptococcus mitis SK321	53.007	99.336	0.527
radA	Streptococcus pneumoniae Rx1	53.007	99.336	0.527
radA	Streptococcus pneumoniae D39	53.007	99.336	0.527
radA	Streptococcus pneumoniae R6	53.007	99.336	0.527
radA	Streptococcus pneumoniae TIGR4	53.007	99.336	0.527