Detailed information NTG0715780

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NQ536_RS08830
• Genome accession: NZ_CP102278
• Coordinates: 2021550..2022911 (-)
• Length: 453 a.a.
• NCBI ID: WP_004849065.1
• Uniprot ID: -
• Organism: Coprococcus eutactus strain ATCC 27759
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2016550..2027911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQ536_RS08830 (NQ536_08830)	radA	2021550..2022911 (-)	1362	WP_004849065.1	DNA repair protein RadA	Machinery gene
NQ536_RS08835 (NQ536_08835)	-	2023019..2023435 (-)	417	WP_004849067.1	hypothetical protein	-
NQ536_RS08840 (NQ536_08840)	-	2023580..2026057 (-)	2478	WP_004849068.1	ATP-dependent Clp protease ATP-binding subunit	-
NQ536_RS08845 (NQ536_08845)	purD	2026208..2027479 (-)	1272	WP_004849070.1	phosphoribosylamine--glycine ligase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 49272.11 Da
• Isoelectric Point: 6.9779

>NTDB_id=715780 NQ536_RS08830 WP_004849065.1 2021550..2022911(-) (radA) [Coprococcus eutactus strain ATCC 27759]
MAKEKQVFFCQECGFESTKWMGQCPGCKAWNSFCEEKVTVGAKSQSGRRTVVAPTSILEVETTDETRFTTGIGELNRVLG
GGIVSGSLVLVGGDPGIGKSTILLQMCRNMSEMGQKILYVSGEESLSQIKMRAERIGRFTKDMLLLCVNNLEDVEEYVKK
DTPKIIVIDSIQTIVTDDIESAPGSVSQVKEVTARLMRMAKQTGIAIFIVGHVTKEGTVAGPRTLEHMVDTVLYFEGERN
AGFRVLRAVKNRFGSTNEIGVFEMKGNGLAEVKNPSQLMLDGRPDDTSGSVVVCTMEGTRPILLEIQALVCQSSFNLPRR
TSVGLDYNRVNLLLAVLEKRGGIVMAGCDAYVNIAGGMRLDDPSADLGIVFALVSSFKNRAIPSDMVMFGEMGLSGEVRG
VSGAEQRVREAAKMGFKTCIIPKSNMDNVKKMKDLGDMKVVGVANIQQALEYI

Nucleotide

• Length: 1362 bp

>NTDB_id=715780 NQ536_RS08830 WP_004849065.1 2021550..2022911(-) (radA) [Coprococcus eutactus strain ATCC 27759]
ATGGCAAAAGAAAAACAGGTGTTTTTTTGCCAGGAATGTGGATTTGAATCGACAAAGTGGATGGGGCAGTGCCCTGGATG
CAAGGCCTGGAATTCATTTTGTGAGGAGAAAGTGACGGTAGGCGCCAAGAGTCAGTCCGGTAGAAGGACTGTCGTGGCGC
CTACAAGCATTTTAGAGGTTGAGACGACTGACGAGACACGATTTACCACAGGAATAGGCGAATTAAACAGAGTGTTAGGT
GGCGGAATAGTGAGTGGTTCACTGGTGCTTGTGGGAGGAGATCCAGGAATAGGTAAGTCCACCATATTGCTGCAGATGTG
CAGAAACATGTCCGAGATGGGACAGAAGATACTGTATGTGTCGGGTGAGGAATCCCTTTCACAGATAAAGATGAGGGCGG
AGCGTATAGGAAGATTTACAAAGGATATGCTGCTTCTCTGTGTCAATAATCTTGAGGATGTGGAGGAATATGTCAAGAAA
GACACGCCTAAGATCATTGTCATAGATTCTATACAGACGATAGTAACGGATGATATAGAGTCTGCGCCGGGAAGCGTATC
CCAGGTGAAGGAAGTGACAGCCAGACTCATGAGAATGGCGAAACAGACAGGAATAGCAATATTTATAGTCGGACATGTGA
CAAAGGAGGGAACTGTGGCGGGACCAAGAACCCTTGAGCACATGGTTGATACAGTTCTCTATTTTGAGGGCGAGCGCAAT
GCAGGCTTTAGAGTACTTCGGGCTGTGAAGAATAGATTTGGATCGACGAATGAGATCGGTGTATTTGAGATGAAGGGAAA
TGGCCTTGCGGAAGTGAAGAATCCATCACAGTTGATGCTTGATGGAAGACCGGATGACACGTCGGGTTCCGTCGTAGTGT
GTACGATGGAGGGAACAAGACCTATACTTCTAGAGATACAGGCGCTGGTCTGCCAGTCGAGCTTCAATCTTCCAAGGCGT
ACCAGTGTAGGACTCGATTACAATAGAGTGAATCTGCTTCTTGCAGTGCTCGAGAAGCGAGGCGGAATAGTTATGGCGGG
ATGCGATGCCTATGTGAATATTGCCGGTGGTATGAGACTTGATGATCCATCTGCAGATCTTGGAATAGTATTTGCACTGG
TGTCGAGTTTTAAGAACCGTGCTATACCATCAGATATGGTTATGTTTGGCGAGATGGGGCTTTCAGGTGAAGTGCGCGGA
GTTTCCGGAGCGGAGCAGAGAGTGCGCGAGGCAGCAAAGATGGGATTCAAGACATGCATAATACCAAAGTCAAATATGGA
TAATGTAAAGAAGATGAAAGACCTTGGTGATATGAAAGTAGTGGGTGTGGCCAATATACAACAGGCACTGGAGTACATAT
AG

Domains

Predicted by InterproScan.

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (356-451)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-33)

• AAA domain (AAA_25) (59-217)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	54.585	100	0.552
radA	Streptococcus mitis NCTC 12261	52.298	100	0.528
radA	Streptococcus pneumoniae Rx1	52.298	100	0.528
radA	Streptococcus pneumoniae D39	52.298	100	0.528
radA	Streptococcus pneumoniae R6	52.298	100	0.528
radA	Streptococcus pneumoniae TIGR4	52.298	100	0.528
radA	Streptococcus mitis SK321	52.079	100	0.525