Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | NQ556_RS12115 | Genome accession | NZ_CP102277 |
| Coordinates | 2456013..2457371 (-) | Length | 452 a.a. |
| NCBI ID | WP_022220515.1 | Uniprot ID | A0A1C5YH15 |
| Organism | Coprococcus comes ATCC 27758 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2451013..2462371
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQ556_RS12115 (NQ556_12110) | radA | 2456013..2457371 (-) | 1359 | WP_022220515.1 | DNA repair protein RadA | Machinery gene |
| NQ556_RS12120 (NQ556_12115) | - | 2457529..2457939 (-) | 411 | WP_008368562.1 | hypothetical protein | - |
| NQ556_RS12125 (NQ556_12120) | - | 2458041..2460488 (-) | 2448 | WP_008368564.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| NQ556_RS12130 (NQ556_12125) | - | 2460514..2460888 (-) | 375 | WP_008368566.1 | GntR family transcriptional regulator | - |
Sequence
Protein
Download Length: 452 a.a. Molecular weight: 49677.40 Da Isoelectric Point: 6.2766
>NTDB_id=715765 NQ556_RS12115 WP_022220515.1 2456013..2457371(-) (radA) [Coprococcus comes ATCC 27758]
MAKAKKSVFFCQNCGHEESKWLGQCPMCKEWNSFVEECVTTSNTAAVKAAKEIRIVPLSEVKTENEERVTTEIKELDRVL
GGGIVPGSLILVGGDPGIGKSTLLLQVCQKLAKKERKVLYISGEESLRQIKLRAQRMGEFNEHLLLLCETNLELIRNVIE
KEKPDTVIIDSIQTMYSEEVGSAPGSVSQVREATNTLMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDR
HASYRILRGVKNRFGSTNEIGVFEMRRDGLREVENPSEFMLNGRPENASGSVVACSMEGTRPILLEIQALVCESNFGMPR
RTAAGTDYNRVNLLMAVLEKRIGYHLGNYDAYVNIAGGIKINEPAIDLGIVMAIVSSYKNRPFDERTIVFGEVGLSGEVR
AVNMPEQRVAEAKKLGFETCIVPEVSLDSVKSIGGIKIIGVKSINEAIGLIE
MAKAKKSVFFCQNCGHEESKWLGQCPMCKEWNSFVEECVTTSNTAAVKAAKEIRIVPLSEVKTENEERVTTEIKELDRVL
GGGIVPGSLILVGGDPGIGKSTLLLQVCQKLAKKERKVLYISGEESLRQIKLRAQRMGEFNEHLLLLCETNLELIRNVIE
KEKPDTVIIDSIQTMYSEEVGSAPGSVSQVREATNTLMQLAKGLGISIFIVGHVTKEGTVAGPRVLEHMVDTVLYFEGDR
HASYRILRGVKNRFGSTNEIGVFEMRRDGLREVENPSEFMLNGRPENASGSVVACSMEGTRPILLEIQALVCESNFGMPR
RTAAGTDYNRVNLLMAVLEKRIGYHLGNYDAYVNIAGGIKINEPAIDLGIVMAIVSSYKNRPFDERTIVFGEVGLSGEVR
AVNMPEQRVAEAKKLGFETCIVPEVSLDSVKSIGGIKIIGVKSINEAIGLIE
Nucleotide
Download Length: 1359 bp
>NTDB_id=715765 NQ556_RS12115 WP_022220515.1 2456013..2457371(-) (radA) [Coprococcus comes ATCC 27758]
ATGGCGAAGGCAAAAAAGTCGGTTTTTTTCTGCCAGAATTGTGGACATGAAGAATCAAAATGGCTGGGGCAGTGCCCAAT
GTGCAAGGAATGGAACTCTTTCGTGGAAGAGTGTGTGACAACGTCGAATACGGCAGCAGTTAAAGCGGCAAAAGAGATTC
GTATTGTACCATTGTCAGAAGTAAAGACAGAGAATGAAGAGCGGGTGACAACCGAGATTAAAGAACTGGATCGTGTACTG
GGAGGCGGAATCGTACCGGGTTCCCTGATTCTGGTAGGCGGTGATCCGGGAATCGGTAAGTCAACGCTGCTCCTGCAGGT
GTGTCAGAAACTGGCAAAAAAAGAACGAAAGGTTTTGTACATATCAGGGGAAGAATCGCTTCGCCAGATTAAATTGCGTG
CACAGAGGATGGGAGAATTTAATGAACATCTGCTTTTGCTTTGTGAGACTAATCTGGAACTGATTCGCAATGTGATTGAA
AAGGAAAAACCAGATACCGTGATCATTGATTCGATTCAGACAATGTACAGTGAAGAAGTCGGTTCCGCACCTGGAAGTGT
GTCGCAGGTCAGAGAGGCAACAAATACGCTGATGCAGCTTGCAAAAGGGCTTGGGATTTCGATTTTTATTGTCGGACATG
TTACAAAAGAAGGAACTGTCGCCGGTCCAAGAGTATTGGAACATATGGTAGATACGGTTCTGTATTTTGAAGGAGACAGG
CATGCATCTTACCGGATTCTTCGAGGAGTGAAAAATCGTTTTGGTTCGACGAATGAGATTGGTGTATTTGAAATGCGAAG
AGATGGTCTTCGGGAGGTGGAAAATCCATCAGAATTTATGCTGAATGGGCGCCCGGAAAATGCATCTGGATCTGTTGTGG
CATGTTCTATGGAAGGAACACGTCCGATCTTGCTGGAAATCCAGGCGCTGGTATGCGAAAGCAATTTTGGAATGCCAAGA
AGAACAGCAGCAGGAACAGATTACAACAGGGTGAACCTTCTGATGGCGGTTTTGGAAAAAAGGATTGGATATCATCTTGG
AAATTATGATGCCTATGTGAATATTGCCGGAGGTATCAAGATCAATGAACCTGCGATAGACCTTGGAATCGTGATGGCGA
TCGTATCAAGCTATAAGAACAGACCATTTGATGAACGGACGATTGTGTTTGGAGAAGTTGGATTAAGTGGAGAAGTCCGG
GCGGTAAATATGCCGGAACAGCGGGTGGCAGAGGCGAAGAAGCTTGGATTTGAGACGTGTATTGTGCCAGAAGTATCTCT
GGATAGCGTGAAGAGTATTGGTGGGATCAAAATCATTGGAGTGAAAAGCATTAACGAGGCAATCGGACTGATTGAGTAG
ATGGCGAAGGCAAAAAAGTCGGTTTTTTTCTGCCAGAATTGTGGACATGAAGAATCAAAATGGCTGGGGCAGTGCCCAAT
GTGCAAGGAATGGAACTCTTTCGTGGAAGAGTGTGTGACAACGTCGAATACGGCAGCAGTTAAAGCGGCAAAAGAGATTC
GTATTGTACCATTGTCAGAAGTAAAGACAGAGAATGAAGAGCGGGTGACAACCGAGATTAAAGAACTGGATCGTGTACTG
GGAGGCGGAATCGTACCGGGTTCCCTGATTCTGGTAGGCGGTGATCCGGGAATCGGTAAGTCAACGCTGCTCCTGCAGGT
GTGTCAGAAACTGGCAAAAAAAGAACGAAAGGTTTTGTACATATCAGGGGAAGAATCGCTTCGCCAGATTAAATTGCGTG
CACAGAGGATGGGAGAATTTAATGAACATCTGCTTTTGCTTTGTGAGACTAATCTGGAACTGATTCGCAATGTGATTGAA
AAGGAAAAACCAGATACCGTGATCATTGATTCGATTCAGACAATGTACAGTGAAGAAGTCGGTTCCGCACCTGGAAGTGT
GTCGCAGGTCAGAGAGGCAACAAATACGCTGATGCAGCTTGCAAAAGGGCTTGGGATTTCGATTTTTATTGTCGGACATG
TTACAAAAGAAGGAACTGTCGCCGGTCCAAGAGTATTGGAACATATGGTAGATACGGTTCTGTATTTTGAAGGAGACAGG
CATGCATCTTACCGGATTCTTCGAGGAGTGAAAAATCGTTTTGGTTCGACGAATGAGATTGGTGTATTTGAAATGCGAAG
AGATGGTCTTCGGGAGGTGGAAAATCCATCAGAATTTATGCTGAATGGGCGCCCGGAAAATGCATCTGGATCTGTTGTGG
CATGTTCTATGGAAGGAACACGTCCGATCTTGCTGGAAATCCAGGCGCTGGTATGCGAAAGCAATTTTGGAATGCCAAGA
AGAACAGCAGCAGGAACAGATTACAACAGGGTGAACCTTCTGATGGCGGTTTTGGAAAAAAGGATTGGATATCATCTTGG
AAATTATGATGCCTATGTGAATATTGCCGGAGGTATCAAGATCAATGAACCTGCGATAGACCTTGGAATCGTGATGGCGA
TCGTATCAAGCTATAAGAACAGACCATTTGATGAACGGACGATTGTGTTTGGAGAAGTTGGATTAAGTGGAGAAGTCCGG
GCGGTAAATATGCCGGAACAGCGGGTGGCAGAGGCGAAGAAGCTTGGATTTGAGACGTGTATTGTGCCAGAAGTATCTCT
GGATAGCGTGAAGAGTATTGGTGGGATCAAAATCATTGGAGTGAAAAGCATTAACGAGGCAATCGGACTGATTGAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
56.512 |
100 |
0.566 |
| radA | Streptococcus mitis NCTC 12261 |
55.778 |
99.558 |
0.555 |
| radA | Streptococcus mitis SK321 |
55.778 |
99.558 |
0.555 |
| radA | Streptococcus pneumoniae Rx1 |
55.778 |
99.558 |
0.555 |
| radA | Streptococcus pneumoniae D39 |
55.778 |
99.558 |
0.555 |
| radA | Streptococcus pneumoniae R6 |
55.778 |
99.558 |
0.555 |
| radA | Streptococcus pneumoniae TIGR4 |
55.778 |
99.558 |
0.555 |