Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NQ514_RS04695 Genome accession   NZ_CP102273
Coordinates   964622..965575 (+) Length   317 a.a.
NCBI ID   WP_022071630.1    Uniprot ID   R5XNG1
Organism   Intestinibacter bartlettii strain DSM 16795     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 959622..970575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ514_RS04680 (NQ514_04690) hcp 961172..962893 (+) 1722 WP_007286070.1 hydroxylamine reductase -
  NQ514_RS04685 (NQ514_04695) - 963120..963761 (-) 642 WP_022071631.1 Crp/Fnr family transcriptional regulator -
  NQ514_RS04690 (NQ514_04700) - 964080..964262 (+) 183 WP_007286068.1 DUF1858 domain-containing protein -
  NQ514_RS04695 (NQ514_04705) ceuB 964622..965575 (+) 954 WP_022071630.1 ABC transporter permease Machinery gene
  NQ514_RS04700 (NQ514_04710) - 965565..966575 (+) 1011 WP_007286066.1 iron chelate uptake ABC transporter family permease subunit -
  NQ514_RS04705 (NQ514_04715) - 966572..967327 (+) 756 WP_007286065.1 ABC transporter ATP-binding protein -
  NQ514_RS04710 (NQ514_04720) - 967396..968367 (+) 972 WP_007286064.1 siderophore ABC transporter substrate-binding protein -
  NQ514_RS04715 (NQ514_04725) - 968573..968935 (+) 363 WP_039905546.1 BlaI/MecI/CopY family transcriptional regulator -
  NQ514_RS04720 (NQ514_04730) - 968963..970450 (+) 1488 WP_007286062.1 M56 family metallopeptidase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34647.70 Da        Isoelectric Point: 8.7062

>NTDB_id=715707 NQ514_RS04695 WP_022071630.1 964622..965575(+) (ceuB) [Intestinibacter bartlettii strain DSM 16795]
MKKRYLTLILITLCIISLLLGAKSINIADILTGHDESMHLMMVSRIPRLISTLVAGSAMSICGLIMQQISQNKFVSPTTG
ATIDSAKLGIVIAMVLVPGATTMQKAMISFVFALAGTMLFMTFLKNLKVKSVIFVPLVGIMFGNIIGSITTYIGYEFDIM
QNVNSWLQGNFSMILKGNYELLYLSIPLMAIAFFYAHKFTVVGMGEDFATNLGLDYNKIVNLGLIIVSIVTVCVVIIAGE
IPYIGLIVPNLVSLYKGDNVHENILDTALFGAIFVLFCDILARVFVYPYELSVGLTVGVIGSGMFLYLVLRRKSYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=715707 NQ514_RS04695 WP_022071630.1 964622..965575(+) (ceuB) [Intestinibacter bartlettii strain DSM 16795]
ATGAAAAAAAGATATTTGACGCTTATATTAATTACTTTATGTATAATTTCTTTGCTATTAGGAGCTAAAAGCATAAATAT
AGCAGATATACTTACTGGGCATGATGAATCAATGCATCTTATGATGGTTAGTAGAATACCGAGATTAATAAGTACACTTG
TAGCAGGTAGTGCTATGAGTATATGTGGTTTAATAATGCAACAAATAAGTCAAAATAAATTTGTTTCACCAACTACAGGA
GCAACAATAGATTCAGCAAAACTTGGTATAGTAATTGCAATGGTTTTAGTACCAGGAGCAACAACTATGCAAAAGGCTAT
GATATCATTTGTTTTTGCACTAGCTGGAACAATGTTATTTATGACTTTTTTAAAAAATTTAAAAGTAAAGAGTGTGATAT
TCGTTCCACTTGTAGGTATTATGTTTGGTAATATAATTGGCTCAATAACTACTTACATTGGGTACGAATTTGACATAATG
CAAAATGTTAACTCATGGTTACAAGGTAATTTTTCAATGATCTTAAAAGGAAATTATGAATTATTATATTTATCAATACC
ACTAATGGCAATTGCATTTTTCTATGCGCACAAATTCACAGTTGTTGGAATGGGTGAAGATTTTGCAACAAACTTAGGAC
TTGATTACAATAAAATTGTAAATCTTGGACTGATAATAGTATCTATAGTAACTGTTTGTGTAGTTATTATAGCTGGTGAA
ATCCCTTATATAGGGTTAATAGTACCAAATTTAGTTTCACTATATAAAGGAGACAATGTACACGAGAATATATTAGATAC
TGCATTATTTGGGGCAATATTTGTTTTATTCTGTGATATTCTTGCAAGAGTATTTGTCTACCCTTATGAGCTTTCTGTAG
GTCTTACAGTTGGTGTAATAGGTAGTGGAATGTTCCTTTATTTAGTTTTAAGGAGGAAATCATATGCAAGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R5XNG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.479

98.738

0.498