Detailed information NTG0715705

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NL409_RS17860
• Genome accession: NZ_CP116994
• Coordinates: 3262340..3263365 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain MLI108K1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3257340..3268365

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NL409_RS17830 (NL409_017790)	zapB	3257424..3257669 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
NL409_RS17835 (NL409_017795)	rraA	3257754..3258239 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NL409_RS17840 (NL409_017800)	menA	3258332..3259258 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NL409_RS17845 (NL409_017805)	hslU	3259325..3260656 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NL409_RS17850 (NL409_017810)	hslV	3260666..3261196 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NL409_RS17855 (NL409_017815)	ftsN	3261289..3262248 (-)	960	WP_000068828.1	cell division protein FtsN	-
NL409_RS17860 (NL409_017820)	cytR	3262340..3263365 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NL409_RS17865 (NL409_017825)	priA	3263521..3265719 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
NL409_RS17870 (NL409_017830)	rpmE	3265922..3266134 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
NL409_RS17875 (NL409_017835)	yiiX	3266195..3266803 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NL409_RS17880 (NL409_017840)	-	3267038..3268018 (-)	981	WP_000399648.1	IS110-like element IS621 family transposase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=715705 NL409_RS17860 WP_000644904.1 3262340..3263365(-) (cytR) [Escherichia coli strain MLI108K1]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=715705 NL409_RS17860 WP_000644904.1 3262340..3263365(-) (cytR) [Escherichia coli strain MLI108K1]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628