Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQ534_RS12650 Genome accession   NZ_CP102268
Coordinates   2686227..2687984 (+) Length   585 a.a.
NCBI ID   WP_260042669.1    Uniprot ID   -
Organism   Marvinbryantia formatexigens DSM 14469     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2677046..2694890 2686227..2687984 within 0


Gene organization within MGE regions


Location: 2677046..2694890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ534_RS12620 (NQ534_12620) - 2677046..2679016 (+) 1971 WP_006864437.1 P-loop NTPase fold protein -
  NQ534_RS12625 (NQ534_12625) - 2679058..2681049 (+) 1992 WP_006864436.1 ATP-dependent nuclease -
  NQ534_RS12630 (NQ534_12630) - 2681051..2682817 (+) 1767 WP_006864435.1 ATP-dependent helicase -
  NQ534_RS12635 (NQ534_12635) - 2683427..2684059 (+) 633 WP_006864434.1 hypothetical protein -
  NQ534_RS21550 - 2684678..2685547 (+) 870 WP_074680279.1 ABC transporter permease -
  NQ534_RS12645 (NQ534_12645) - 2685688..2686107 (+) 420 WP_006864700.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ534_RS12650 (NQ534_12650) rcrP 2686227..2687984 (+) 1758 WP_260042669.1 ABC transporter ATP-binding protein Regulator
  NQ534_RS12655 (NQ534_12655) rcrQ 2687977..2689797 (+) 1821 WP_260042670.1 ABC transporter ATP-binding protein Regulator
  NQ534_RS12660 (NQ534_12660) - 2689837..2690733 (+) 897 WP_006862993.1 aldo/keto reductase -
  NQ534_RS12665 (NQ534_12665) ftsH 2690810..2692735 (+) 1926 WP_006862992.1 ATP-dependent zinc metalloprotease FtsH -
  NQ534_RS12670 (NQ534_12670) - 2693328..2693483 (+) 156 WP_006862990.1 hypothetical protein -
  NQ534_RS12675 (NQ534_12675) - 2693556..2694890 (+) 1335 WP_006862989.1 RNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64117.13 Da        Isoelectric Point: 7.0867

>NTDB_id=715648 NQ534_RS12650 WP_260042669.1 2686227..2687984(+) (rcrP) [Marvinbryantia formatexigens DSM 14469]
MIKIFRYFNRKQWLYVAASILFVVIQVWLDLKLPDYMSGITTLVQTEGSAMSDILIQGGYMLMCALGSMVASIIVGFFAA
RVAAGLAQTLRNCVYDKTMDFSMEEIDRFSTASLINRTTNDVTQIQNLVAMGLQAIMKAPILAVWAVVKIAGKSWQWTAA
TVVAVFVLVVALAVTLIFALPRFQRIQGLTDNLNRVTREQLTGIRVVRAYNAEGYQEKKFAVANDELTSTNLVANRVMAM
MSPTMTLINSGLTLAVYWIGAYLIEAASLTDKLGIFSDMVVFSNYAMQVILAFMMLNMIFVLLPRAQVSARRICEVLDTE
NHIYDGAGVKAEKCGTVEFRHVSFRYPGAAADTLTDISFTARAGETIALIGATGSGKTTLINLIPRFYDVAEGQVLVDGA
DVQEYKQEELHNRIGYVSQKAVLFSGTVASNVAYGERGHGTVSDGEIKEAVAIAQSTDFVEKMEGTYDAPIAQSGTNVSG
GQKQRLSIARAVARKPEILIFDDSFSALDYKTDRALRKALSESTAQTTKLIVAQRIGTIRHADQIIALEHGRIVGKGTHE
ELLKTCVTYQEIASSQLSKEELNNG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=715648 NQ534_RS12650 WP_260042669.1 2686227..2687984(+) (rcrP) [Marvinbryantia formatexigens DSM 14469]
ATGATTAAAATTTTCAGGTATTTCAATCGAAAGCAATGGCTTTATGTCGCCGCCAGTATCCTTTTTGTTGTGATTCAGGT
ATGGCTGGACTTAAAGCTCCCAGATTATATGTCCGGTATCACAACGCTTGTGCAGACAGAGGGAAGTGCTATGTCGGACA
TTTTGATACAAGGCGGATATATGCTGATGTGCGCTCTCGGCAGTATGGTGGCCTCAATTATTGTAGGTTTCTTTGCTGCC
AGAGTTGCGGCGGGACTTGCGCAAACCCTGCGGAATTGTGTTTATGACAAGACGATGGATTTTTCTATGGAAGAGATTGA
TCGGTTTTCTACTGCCAGCCTCATAAACCGGACGACAAATGATGTAACTCAAATTCAAAATCTGGTAGCTATGGGGTTAC
AGGCGATCATGAAAGCACCCATTCTGGCAGTATGGGCAGTTGTCAAGATTGCGGGAAAAAGCTGGCAATGGACGGCGGCC
ACTGTTGTAGCGGTATTTGTGCTGGTGGTTGCCCTTGCTGTCACACTGATTTTTGCGCTGCCTCGCTTCCAGCGTATTCA
AGGGTTGACAGATAACCTGAACCGGGTTACCAGAGAGCAGCTTACCGGAATCCGTGTGGTGCGAGCTTATAATGCAGAGG
GCTATCAGGAAAAGAAATTTGCAGTTGCCAATGACGAACTGACTTCCACAAATTTGGTTGCAAATCGTGTCATGGCGATG
ATGTCACCAACCATGACTCTGATTAACTCAGGATTGACACTTGCCGTTTACTGGATTGGCGCTTATTTGATAGAGGCAGC
AAGCCTTACCGACAAGTTGGGGATTTTCTCGGATATGGTGGTCTTTTCTAACTATGCCATGCAGGTCATTTTGGCATTTA
TGATGTTGAATATGATTTTTGTGTTGTTGCCCCGTGCGCAGGTATCCGCAAGGCGTATCTGTGAAGTACTTGATACGGAA
AATCACATTTATGATGGTGCGGGAGTGAAGGCTGAAAAATGCGGAACGGTAGAATTTCGTCATGTATCTTTCCGGTATCC
GGGCGCTGCGGCTGATACATTGACCGACATCAGCTTTACGGCAAGGGCTGGCGAAACAATCGCATTGATCGGTGCCACAG
GCAGTGGAAAAACCACTCTGATTAATTTGATTCCCAGATTTTATGATGTGGCCGAAGGTCAGGTCTTAGTGGATGGCGCA
GATGTGCAGGAATACAAACAGGAGGAACTGCACAATCGAATCGGTTATGTTTCGCAAAAGGCGGTGCTGTTCTCTGGTAC
GGTAGCTTCCAATGTGGCCTATGGGGAAAGAGGACATGGAACTGTCTCAGACGGAGAAATCAAAGAGGCGGTTGCTATCG
CGCAGAGCACGGATTTTGTAGAAAAGATGGAAGGAACCTACGATGCCCCGATTGCACAAAGCGGCACAAATGTGTCCGGC
GGTCAGAAGCAGAGGCTTTCTATTGCCAGAGCAGTTGCAAGAAAACCAGAGATCCTGATTTTCGATGATTCCTTTTCTGC
ATTGGATTACAAAACTGACCGGGCATTACGAAAAGCACTGAGCGAAAGCACGGCACAGACAACAAAGCTGATTGTGGCGC
AACGTATTGGCACTATCCGTCATGCAGACCAAATCATTGCGTTGGAGCATGGAAGGATCGTAGGAAAAGGAACCCACGAG
GAACTGCTAAAAACCTGTGTGACCTATCAGGAAATTGCAAGCTCACAGCTTTCAAAGGAGGAATTAAACAATGGCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(354-504)

ABC transporter transmembrane region (ABC_membrane)

(18-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.922

100

0.542