Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ534_RS10710 Genome accession   NZ_CP102268
Coordinates   2253687..2255477 (+) Length   596 a.a.
NCBI ID   WP_006862032.1    Uniprot ID   C6LF39
Organism   Marvinbryantia formatexigens DSM 14469     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2248687..2260477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ534_RS10700 (NQ534_10700) - 2248739..2251789 (+) 3051 WP_006862035.1 ATP-binding cassette domain-containing protein -
  NQ534_RS10705 (NQ534_10705) rcrP 2251914..2253674 (+) 1761 WP_006862033.1 ABC transporter ATP-binding protein Regulator
  NQ534_RS10710 (NQ534_10710) rcrQ 2253687..2255477 (+) 1791 WP_006862032.1 ABC transporter ATP-binding protein Regulator
  NQ534_RS10715 (NQ534_10715) - 2255525..2256118 (+) 594 WP_006862031.1 AAA family ATPase -
  NQ534_RS10720 (NQ534_10720) - 2256278..2256448 (+) 171 WP_176944194.1 hypothetical protein -
  NQ534_RS10730 (NQ534_10730) - 2257044..2257475 (-) 432 WP_006862028.1 tyrosine-type recombinase/integrase -
  NQ534_RS10735 (NQ534_10735) - 2257548..2257913 (-) 366 WP_006862027.1 hypothetical protein -
  NQ534_RS10740 (NQ534_10740) - 2257940..2258278 (-) 339 WP_006862026.1 hypothetical protein -
  NQ534_RS10745 (NQ534_10745) - 2258681..2259145 (+) 465 WP_006862024.1 BrnT family toxin -
  NQ534_RS10750 (NQ534_10750) - 2259129..2259326 (+) 198 WP_006862023.1 hypothetical protein -
  NQ534_RS10760 (NQ534_10760) - 2259731..2260276 (-) 546 WP_006862022.1 Uma2 family endonuclease -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65872.78 Da        Isoelectric Point: 6.5879

>NTDB_id=715646 NQ534_RS10710 WP_006862032.1 2253687..2255477(+) (rcrQ) [Marvinbryantia formatexigens DSM 14469]
MNRNQMTVPSKSKRGIVGVLKELFSYAGNIKAPMAVAMLLAIAGAVLTIIGPNQMSRITDLISEGLMGEIDLEAIGKIAA
LLLGIYIVSAVCTYVEHYIMATITLNLAKKMRRDLSYKINHVPMKCFGKLPFGDILSRVTNDVSTLQQALSNSLPTMVSA
TAQFVGCLVMMFATEWRMALAAVCVTLLGFVLMALIMSRSQKYFVARQESLGALNGYVEEIYSGHDVVRISRANRKVKAR
FDEMNKAVYNANCMSQFLSGIMQPLMNVIGNLSYVVVCVLGAVFVMDDQITFGVITAFIMYVRLFTSPLGQLAQGMTQMQ
TAAAAGDRVFDFLQEEELPEDRGIEIAPEQVHGSVKFEHVRFSYPNNPDKIIIKDFSAKVKPGQKVAIVGPTGAGKTTMV
NLLMRFYEINGGDISIDGISTFDMKRESLHNLFGMVLQDTWIFKGTVRENLVYNKEGVSDEKLAEACKACGIYHFIETLP
EGFDTILDENVTISSGQKQLLTIARAMIQDSPMLILDEATSSVDTRTELITQRAMDKLTENRTSFVIAHRLSTIKNADLI
LVMKDGDIIEQGDHETLLKKGGFYAELYNSQFEKAS

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=715646 NQ534_RS10710 WP_006862032.1 2253687..2255477(+) (rcrQ) [Marvinbryantia formatexigens DSM 14469]
ATGAACAGAAATCAAATGACGGTACCGTCGAAAAGCAAAAGGGGAATTGTGGGCGTCCTGAAGGAGCTGTTTTCGTATGC
CGGAAACATAAAGGCGCCGATGGCAGTCGCTATGCTGCTGGCGATTGCCGGAGCGGTTCTGACGATTATCGGACCGAACC
AGATGAGCAGAATCACGGATCTGATATCCGAAGGTCTGATGGGAGAAATCGACCTGGAGGCAATCGGAAAAATTGCCGCC
CTGCTCCTTGGCATATATATTGTGAGCGCTGTGTGCACCTACGTGGAGCACTACATTATGGCAACTATCACACTTAATCT
GGCGAAGAAAATGCGCCGCGATTTATCCTATAAGATTAATCACGTGCCGATGAAATGCTTCGGAAAGCTGCCCTTCGGTG
ATATTTTAAGCCGTGTCACAAATGATGTGAGCACTCTGCAGCAGGCGCTTTCCAACAGTCTTCCCACGATGGTCAGCGCT
ACGGCACAGTTTGTGGGCTGTCTGGTGATGATGTTTGCAACAGAATGGCGGATGGCGCTGGCGGCAGTTTGTGTGACATT
GCTCGGCTTCGTGCTGATGGCGTTGATCATGAGCAGGTCACAGAAATACTTTGTTGCAAGACAGGAAAGCCTTGGCGCTT
TAAACGGATACGTGGAGGAGATTTATTCCGGTCATGATGTTGTACGTATCTCGCGGGCAAACCGCAAGGTAAAGGCGCGC
TTTGATGAAATGAACAAGGCGGTGTATAATGCAAACTGCATGAGCCAGTTTCTTTCCGGTATCATGCAGCCGCTGATGAA
TGTCATCGGCAACCTCAGCTATGTGGTGGTCTGCGTGCTCGGCGCAGTATTTGTGATGGACGACCAGATTACGTTTGGTG
TAATCACAGCGTTTATTATGTATGTGCGGCTGTTTACATCGCCGCTTGGACAGCTTGCCCAGGGCATGACGCAGATGCAG
ACGGCAGCGGCGGCGGGAGACCGTGTCTTTGACTTCCTGCAGGAGGAGGAGCTTCCGGAGGACCGCGGCATAGAAATCGC
GCCGGAGCAGGTGCACGGCAGTGTGAAATTTGAGCATGTGCGCTTCAGCTACCCGAATAACCCGGATAAGATTATCATCA
AAGATTTTTCCGCAAAGGTGAAGCCGGGGCAGAAGGTGGCGATTGTCGGACCGACCGGCGCCGGAAAGACCACGATGGTC
AACCTGCTGATGCGGTTTTACGAGATTAACGGCGGGGATATTTCCATCGACGGCATTTCCACCTTTGACATGAAGCGGGA
ATCGCTGCACAATCTGTTTGGAATGGTTCTGCAGGACACCTGGATTTTTAAAGGAACCGTGCGCGAAAACCTTGTGTATA
ACAAGGAGGGCGTGAGCGACGAGAAGCTTGCAGAGGCGTGCAAAGCCTGCGGTATTTATCATTTTATTGAGACGCTGCCG
GAGGGCTTTGATACGATTCTGGATGAAAACGTCACGATTTCCTCCGGTCAGAAGCAGCTTCTGACCATCGCCAGGGCGAT
GATTCAGGACAGTCCGATGCTGATTCTGGATGAGGCGACCTCGTCAGTTGATACCAGAACAGAGCTGATCACGCAGCGGG
CAATGGATAAGCTGACCGAGAACCGCACGAGCTTTGTGATTGCGCACAGACTTTCTACGATTAAGAACGCCGACCTGATT
CTGGTCATGAAGGACGGCGACATTATCGAGCAGGGAGACCATGAGACGCTGCTGAAGAAGGGCGGATTCTATGCGGAGCT
GTACAACAGTCAATTTGAAAAGGCGTCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-309)

ABC transporter (ABC_tran)

(374-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6LF39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.742

96.309

0.498