Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQ534_RS10705 Genome accession   NZ_CP102268
Coordinates   2251914..2253674 (+) Length   586 a.a.
NCBI ID   WP_006862033.1    Uniprot ID   C6LF40
Organism   Marvinbryantia formatexigens DSM 14469     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2246914..2258674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ534_RS10695 (NQ534_10695) - 2247840..2248514 (-) 675 WP_006862036.1 response regulator transcription factor -
  NQ534_RS10700 (NQ534_10700) - 2248739..2251789 (+) 3051 WP_006862035.1 ATP-binding cassette domain-containing protein -
  NQ534_RS10705 (NQ534_10705) rcrP 2251914..2253674 (+) 1761 WP_006862033.1 ABC transporter ATP-binding protein Regulator
  NQ534_RS10710 (NQ534_10710) rcrQ 2253687..2255477 (+) 1791 WP_006862032.1 ABC transporter ATP-binding protein Regulator
  NQ534_RS10715 (NQ534_10715) - 2255525..2256118 (+) 594 WP_006862031.1 AAA family ATPase -
  NQ534_RS10720 (NQ534_10720) - 2256278..2256448 (+) 171 WP_176944194.1 hypothetical protein -
  NQ534_RS10730 (NQ534_10730) - 2257044..2257475 (-) 432 WP_006862028.1 tyrosine-type recombinase/integrase -
  NQ534_RS10735 (NQ534_10735) - 2257548..2257913 (-) 366 WP_006862027.1 hypothetical protein -
  NQ534_RS10740 (NQ534_10740) - 2257940..2258278 (-) 339 WP_006862026.1 hypothetical protein -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 64634.32 Da        Isoelectric Point: 6.8426

>NTDB_id=715645 NQ534_RS10705 WP_006862033.1 2251914..2253674(+) (rcrP) [Marvinbryantia formatexigens DSM 14469]
MLKLFKKMHSREWKMAGICALLIIGQIYFELRLPDYMSNLTVLIETPGSSMSEVYRTGAEMLACTLASAALSILCGYLVS
RIAGGFSYTIRELVFNKVADFGQKEMHAFSVPSLINRTTNDITQIQMFVAMGLQIMVKSPVMAVWAVLKIINKSWTLSVI
TAGFVVALLCIMVLIIVIILPRVRRVQKMLDDINLISRENLNGINVVHAYNAEEYQAEKFEKANDRLTRTQLFNQRALAF
LMPVVSFAMNALALIIYWVGAAIINDVPLTDMTGRIAQFGDIVVFGTYATYVIMSIMMMVMIIMLLPSAQVSAGRINEVL
DTEIKLCEGDRTEAAETGTVEFKNVSFRYPSSGKNVLENISFKANKGETIAFIGATGSGKTTLVSLAARFYDATEGEVLI
DGEDVRSYSFDALYNRIGYVTQKAVLFAGDIKNNVLFGESSAPQTDENVQEALDIAQATEFVSKLSKGTESPIVQGGTNV
SGGQKQRLSIARALARKPEILIFDDSFSALDYRTDAKLRRALNEKLKGTTCLIVAQRIGTIRNADKIVVLEDGKAAGIGT
HEELMKTCKVYQEIAMSQLSKEELEA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=715645 NQ534_RS10705 WP_006862033.1 2251914..2253674(+) (rcrP) [Marvinbryantia formatexigens DSM 14469]
ATGCTGAAACTTTTTAAAAAGATGCACAGCAGGGAGTGGAAAATGGCAGGAATCTGCGCTCTGCTGATTATTGGACAGAT
TTATTTTGAGCTGCGGCTGCCGGATTATATGAGTAATCTGACGGTGCTCATTGAAACGCCGGGGAGCAGCATGAGTGAGG
TTTACCGCACGGGCGCGGAAATGCTTGCCTGCACGCTTGCGAGCGCGGCGCTGAGTATCCTGTGCGGATACCTAGTTTCC
AGGATCGCCGGTGGCTTCAGCTATACCATCCGCGAGCTGGTATTTAATAAAGTGGCGGATTTCGGGCAGAAGGAGATGCA
CGCGTTTTCCGTGCCCAGTCTGATTAACCGTACCACAAACGATATTACCCAGATACAGATGTTTGTGGCAATGGGACTGC
AGATTATGGTAAAATCGCCGGTCATGGCGGTCTGGGCGGTTCTGAAGATTATAAACAAGAGCTGGACGCTTTCTGTGATT
ACAGCCGGTTTTGTAGTGGCACTGCTGTGTATCATGGTACTTATTATTGTGATAATCCTGCCTCGTGTGAGACGTGTGCA
GAAAATGCTGGATGATATTAACCTGATATCACGGGAAAACTTGAACGGCATCAATGTGGTACACGCCTACAATGCTGAGG
AATATCAGGCAGAAAAGTTTGAAAAGGCAAACGACAGGCTCACAAGGACACAGCTTTTCAACCAGCGCGCACTGGCGTTT
CTGATGCCGGTGGTGTCCTTCGCCATGAATGCGCTGGCGCTGATCATCTACTGGGTGGGGGCGGCGATTATCAACGACGT
CCCGCTGACGGATATGACGGGAAGAATCGCGCAGTTCGGCGATATCGTAGTATTCGGGACATACGCGACTTATGTGATTA
TGTCCATCATGATGATGGTCATGATCATTATGCTGCTGCCGTCCGCACAGGTTTCCGCAGGACGAATCAACGAGGTTCTT
GATACGGAAATAAAGCTCTGCGAAGGCGACAGGACAGAGGCGGCGGAAACAGGAACAGTGGAATTTAAGAATGTATCGTT
CCGGTACCCGTCTTCCGGCAAAAATGTGCTGGAGAATATCAGCTTTAAAGCAAATAAGGGCGAGACCATTGCCTTTATCG
GAGCGACTGGAAGCGGCAAGACCACGCTGGTCAGCCTGGCGGCGCGCTTCTACGACGCCACGGAGGGCGAGGTGCTGATA
GACGGCGAGGATGTGCGGTCTTATTCCTTCGACGCGCTGTATAACCGCATCGGTTATGTGACGCAGAAGGCGGTACTTTT
TGCAGGAGATATCAAAAACAATGTGTTGTTTGGAGAGAGCAGCGCACCGCAGACGGATGAGAACGTGCAGGAGGCGCTGG
ATATCGCGCAGGCGACGGAGTTTGTCAGCAAGCTTTCCAAAGGCACGGAAAGCCCCATCGTCCAGGGCGGAACCAATGTA
TCCGGCGGACAGAAGCAGAGACTTTCCATCGCCAGGGCGCTGGCGCGGAAGCCGGAAATCCTTATATTCGATGATTCCTT
CTCCGCGCTGGATTACCGGACGGATGCAAAGCTGCGCCGGGCGCTGAATGAAAAGCTGAAGGGAACCACCTGCCTGATTG
TGGCGCAGCGTATTGGAACCATCCGCAATGCGGATAAGATTGTCGTGCTGGAGGATGGTAAGGCGGCAGGCATCGGAACC
CATGAGGAACTGATGAAGACCTGCAAGGTATACCAGGAAATTGCGATGTCCCAGCTCTCGAAGGAAGAGCTTGAGGCGTA
G

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(52-295)

ABC transporter (ABC_tran)

(357-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6LF40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.667

100

0.498