Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   FFK26_RS23940 Genome accession   NZ_AP024130
Coordinates   5013301..5014293 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain SI-NP020     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5008301..5019293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFK26_RS23930 (BvCmsSINP020_4743) yieP 5011193..5011885 (+) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -
  FFK26_RS23935 (BvCmsSINP020_4744) mdtD 5011908..5013335 (+) 1428 WP_001280887.1 multidrug transporter subunit MdtD -
  FFK26_RS23940 (BvCmsSINP020_4745) cytR 5013301..5014293 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  FFK26_RS23945 (BvCmsSINP020_4746) rbsK 5014297..5015226 (-) 930 WP_001300603.1 ribokinase -
  FFK26_RS23950 (BvCmsSINP020_4747) rbsB 5015352..5016242 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  FFK26_RS23955 (BvCmsSINP020_4748) rbsC 5016267..5017232 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  FFK26_RS23960 (BvCmsSINP020_4749) rbsA 5017237..5018742 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  FFK26_RS23965 (BvCmsSINP020_4750) rbsD 5018750..5019169 (-) 420 WP_001297694.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=71564 FFK26_RS23940 WP_000224470.1 5013301..5014293(-) (cytR) [Escherichia coli strain SI-NP020]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=71564 FFK26_RS23940 WP_000224470.1 5013301..5014293(-) (cytR) [Escherichia coli strain SI-NP020]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGAGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment