Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   URS_RS03545 Genome accession   NZ_AP018824
Coordinates   721702..722028 (-) Length   108 a.a.
NCBI ID   WP_004995304.1    Uniprot ID   A0A3F3L3D3
Organism   Acinetobacter ursingii strain M3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 716702..727028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS03525 (URS_0725) - 716922..717575 (-) 654 WP_010588790.1 FHA domain-containing protein -
  URS_RS03530 (URS_0726) gspD 717645..719918 (-) 2274 WP_010588791.1 type II secretion system secretin GspD -
  URS_RS03535 (URS_0727) - 719961..720794 (-) 834 WP_004995300.1 type II secretion system protein N -
  URS_RS03540 (URS_0728) gspN 720794..721537 (-) 744 WP_010588792.1 type II secretion system protein N -
  URS_RS03545 (URS_0729) hns 721702..722028 (-) 327 WP_004995304.1 H-NS family nucleoid-associated regulatory protein Regulator
  URS_RS03550 (URS_0730) - 722600..723034 (-) 435 WP_005001845.1 thioesterase family protein -
  URS_RS03555 (URS_0731) - 723043..724230 (-) 1188 WP_005001843.1 hypothetical protein -
  URS_RS03560 (URS_0732) - 724240..725076 (-) 837 WP_010588793.1 hypothetical protein -
  URS_RS03565 (URS_0733) - 725073..725855 (-) 783 WP_010588794.1 uroporphyrinogen-III synthase -
  URS_RS03570 (URS_0734) hemC 725881..726798 (-) 918 WP_119686668.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12432.09 Da        Isoelectric Point: 4.8700

>NTDB_id=71563 URS_RS03545 WP_004995304.1 721702..722028(-) (hns) [Acinetobacter ursingii strain M3]
MKPDISELSVDELKRLQEEAEALIASKKDQAIEDAYNQILAVAEAVGFTVEELLEYGEQKRKKTTRKAVEPRYRNKNNPE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=71563 URS_RS03545 WP_004995304.1 721702..722028(-) (hns) [Acinetobacter ursingii strain M3]
ATGAAACCAGATATTAGTGAACTTTCGGTTGATGAGTTAAAACGGTTGCAAGAAGAAGCTGAGGCATTAATTGCATCTAA
AAAAGATCAGGCAATTGAAGATGCTTATAATCAAATTTTAGCAGTTGCTGAGGCAGTGGGCTTTACGGTTGAAGAATTAC
TTGAGTATGGTGAGCAAAAGCGTAAAAAAACTACGCGTAAAGCCGTTGAGCCGCGCTACCGTAATAAAAATAATCCAGAA
GAAACTTGGACAGGTCGTGGTAAACAACCTCGCTGGCTTGTTGCTGAACTTGAAAAAGGTGCAAAACTTGAAGACTTCTT
GATCTAG

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3F3L3D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889

Multiple sequence alignment