Detailed information NTG0715559

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NQ505_RS01070
• Genome accession: NZ_CP102261
• Coordinates: 268882..270249 (+)
• Length: 455 a.a.
• NCBI ID: WP_008999048.1
• Uniprot ID: A0A139L098
• Organism: Bacteroides sp. D2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 263882..275249

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQ505_RS01060 (NQ505_01060)	-	266530..267567 (+)	1038	WP_008999046.1	asparaginase	-
NQ505_RS01065 (NQ505_01065)	-	267671..268870 (+)	1200	WP_008999047.1	ATP-binding protein	-
NQ505_RS01070 (NQ505_01070)	radA	268882..270249 (+)	1368	WP_008999048.1	DNA repair protein RadA	Machinery gene
NQ505_RS01075 (NQ505_01075)	-	270875..271957 (+)	1083	WP_008999049.1	acyltransferase family protein	-
NQ505_RS01080 (NQ505_01080)	-	272036..273688 (+)	1653	WP_008999050.1	NAD(P)/FAD-dependent oxidoreductase	-
NQ505_RS01085 (NQ505_01085)	-	273705..274307 (+)	603	WP_008999051.1	response regulator transcription factor	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50143.69 Da
• Isoelectric Point: 5.7328

>NTDB_id=715559 NQ505_RS01070 WP_008999048.1 268882..270249(+) (radA) [Bacteroides sp. D2]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGEWNTYVEEIVRKEPTNRRPVSGIETQKPKPLALSDIEADDEPRINMHDDELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVMQTVLHMPEKKILYVSGEESARQLKLRADRLSDTSSDCLIVCETSLEQIYVHI
KNTNPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVNNPSELLLSQDHEGMSGVAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLPVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFLLPKYNLQGIDTQKLKIELVPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=715559 NQ505_RS01070 WP_008999048.1 268882..270249(+) (radA) [Bacteroides sp. D2]
ATGGCAAAAGAGAAAACCGTATATGTATGCAGTAATTGCGGACAGGATTCACCGAAATGGGTGGGTAAATGTCCGTCGTG
TGGAGAATGGAATACGTATGTTGAAGAAATTGTACGGAAAGAACCTACCAACCGCCGTCCGGTGTCGGGCATTGAAACAC
AGAAACCCAAACCACTGGCACTTAGCGATATTGAAGCGGACGACGAGCCACGCATTAATATGCACGACGATGAATTGAAT
CGCGTATTGGGTGGCGGACTTGTACAAGGTTCTCTTGTCCTGATAGGCGGTGAGCCGGGAATCGGTAAATCCACGCTCGT
CATGCAGACCGTACTGCACATGCCGGAAAAGAAAATCCTTTATGTGTCCGGTGAAGAAAGTGCACGACAGCTTAAACTCC
GTGCCGACCGTCTCTCTGATACTTCCAGCGATTGCCTGATTGTTTGTGAGACTTCGCTCGAACAAATTTATGTGCATATC
AAGAATACGAATCCCGATTTAGTGATTATTGACTCTATACAGACTATTTCCACCGAGAGTATCGAATCATCTCCCGGAAG
TATTGCGCAAGTCAGAGAGTGTTCGGCATCTATTCTTCGTTTCGCGAAAGAAACGCATACCCCTGTGTTGCTGATCGGTC
ATATTAATAAAGAAGGAAGTATTGCAGGACCTAAAGTATTGGAACATATCGTAGATACCGTCCTTCAATTTGAAGGCGAT
CAGCATTATATGTATCGTATTCTGCGCAGTATCAAGAATCGTTTCGGCAGTACGGCAGAATTAGGGATTTATGAAATGCG
TCAGGATGGGTTGCGCCAGGTGAATAATCCTTCCGAGCTTTTGCTTAGTCAGGATCATGAGGGAATGAGTGGAGTGGCTA
TTGCTTCCGCTATCGAAGGGATCCGCCCGTTCTTGATCGAGACACAGGCTTTGGTCAGTTCTGCTGTTTATGGAAATCCT
CAACGTTCGGCAACCGGTTTCGATTTAAGAAGAATGAATATGCTGCTGGCTGTTCTCGAAAAGCGTGTCGGATTTAAGCT
GGCACAGAAAGATGTGTTCCTGAATATTGCCGGAGGATTGAAAGTGAATGATCCGGCTATCGATCTGCCGGTTATCAGTG
CGATCCTTTCTTCCAATATGGATGCAGCCATTGAACCGGAAGTTTGCATGGCGGGAGAAATCGGTCTGTCGGGAGAGATA
CGTCCTGTGAATCGAATTGAACAGCGTATCGGTGAAGCTGAAAAGTTAGGTTTCAAACGTTTCTTGCTGCCTAAATATAA
CTTGCAAGGGATCGATACCCAAAAACTGAAGATAGAATTAGTACCGGTGAGAAAAGTAGAAGAGGCGTTCAGGGCTTTAT
TCGGATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (58-219)

3D structure

• AlphaFold DB: A0A139L098

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.304	100	0.519
radA	Streptococcus mitis SK321	47.692	100	0.477
radA	Streptococcus pneumoniae Rx1	47.692	100	0.477
radA	Streptococcus pneumoniae D39	47.692	100	0.477
radA	Streptococcus pneumoniae R6	47.692	100	0.477
radA	Streptococcus pneumoniae TIGR4	47.692	100	0.477
radA	Streptococcus mitis NCTC 12261	47.692	100	0.477