Detailed information NTG0715549

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NQ546_RS05275
• Genome accession: NZ_CP102258
• Coordinates: 1343505..1344872 (-)
• Length: 455 a.a.
• NCBI ID: WP_039953074.1
• Uniprot ID: A0A380Z9N8
• Organism: Bacteroides eggerthii strain DSM 20697
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1338505..1349872

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQ546_RS05260 (NQ546_05260)	-	1339253..1341289 (+)	2037	WP_039953188.1	thiamine pyrophosphate-dependent enzyme	-
NQ546_RS05265 (NQ546_05265)	-	1341307..1341813 (+)	507	WP_004288979.1	flavodoxin	-
NQ546_RS05270 (NQ546_05270)	-	1341808..1343430 (-)	1623	WP_004288980.1	NAD(P)/FAD-dependent oxidoreductase	-
NQ546_RS05275 (NQ546_05275)	radA	1343505..1344872 (-)	1368	WP_039953074.1	DNA repair protein RadA	Machinery gene
NQ546_RS05280 (NQ546_05280)	-	1345174..1346214 (-)	1041	WP_004288983.1	asparaginase	-
NQ546_RS05285 (NQ546_05285)	thrA	1346750..1349182 (+)	2433	WP_004288985.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50071.80 Da
• Isoelectric Point: 6.4033

>NTDB_id=715549 NQ546_RS05275 WP_039953074.1 1343505..1344872(-) (radA) [Bacteroides eggerthii strain DSM 20697]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYMEEIVRKETVNKRPVSGIETAKAKPVTLNEIAADDEPRIDLHDAELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTMLQIPEKRILYISGEESARQLKLRADRLTSNSADCLIVCETSLEQIYVHI
KNTRPDLVVIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLTQDHEGMSGIAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLSVISAILSSNMDTAIEPEICMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGLNTSKLKIELIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=715549 NQ546_RS05275 WP_039953074.1 1343505..1344872(-) (radA) [Bacteroides eggerthii strain DSM 20697]
ATGGCAAAGGAGAAAACAGTCTATGTATGCAGCAACTGCGGACAAGAGTCGCCCAAATGGGTGGGCAAATGCCCGTCGTG
CGGAGAATGGAATACTTATATGGAAGAGATAGTGCGGAAAGAAACCGTAAACAAGCGTCCGGTATCGGGCATAGAGACAG
CCAAAGCCAAGCCCGTCACTTTAAATGAGATTGCCGCTGATGATGAGCCCCGTATCGACCTGCACGACGCAGAGCTGAAC
CGCGTACTGGGCGGCGGTCTGGTGCAAGGTTCACTGGTATTGATAGGCGGCGAACCGGGCATCGGAAAATCCACACTGGT
GCTGCAAACCATGCTTCAGATACCGGAGAAACGCATTCTCTACATATCAGGCGAGGAAAGCGCCCGGCAGTTGAAGCTGC
GTGCCGACCGCCTGACAAGCAACTCCGCCGACTGCCTGATTGTCTGTGAGACTTCTTTGGAACAGATCTATGTACACATA
AAGAATACACGTCCCGACCTCGTTGTCATAGACTCCATACAGACCATTTCAACGGAAACGCTCGAATCCTCTCCGGGCAG
CATAGCCCAAGTCAGGGAGTGCTCCGCCTCTATCCTGCGCTTTGCCAAAGAGACGCATACGGCGGTAATCCTTATCGGTC
ACATCAATAAGGAAGGAAGCATTGCCGGTCCCAAAGTGCTGGAACACATTGTAGACACCGTACTCCAGTTTGAAGGCGAC
CAGCATTATATGTACCGCATCCTGCGCAGCATCAAGAACCGCTTCGGAAGTACTGCCGAACTGGGCATCTACGAGATGAG
GCAAGACGGATTGCGGCAGGTGAGCAACCCTTCGGAACTGCTTCTCACCCAAGACCATGAGGGAATGAGCGGCATAGCCA
TTGCTTCCGCCATAGAAGGCATCCGCCCGTTCCTGATAGAGACGCAGGCGTTGGTGAGCAGTGCCGTTTATGGAAATCCG
CAACGCTCCGCCACCGGCTTCGACATACGGAGAATGAATATGCTGCTTGCCGTACTGGAGAAACGCGTCGGCTTCAAGCT
CGCCCAAAAAGATGTATTCCTCAACATTGCCGGCGGACTGAAAGTCAACGACCCCGCCATCGACCTCTCCGTCATCAGCG
CCATCCTCTCCAGCAATATGGACACAGCCATAGAGCCTGAGATATGCATGGCGGGAGAAATAGGGCTGTCCGGTGAAATC
CGCCCCGTCAACCGCATCGAACAACGCATCGGCGAAGCGGAGAAACTCGGCTTCAAGCGGTTCATACTTCCCAAATACAA
TATGCAGGGACTGAACACTTCCAAGCTGAAAATCGAACTTATACCGGTGAGAAAGGTGGAAGAGGCGTTCCGGGCATTGT
TCGGATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-33)

• AAA domain (AAA_25) (72-219)

3D structure

• AlphaFold DB: A0A380Z9N8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	51.198	100	0.516
radA	Streptococcus mitis SK321	47.033	100	0.47
radA	Streptococcus mitis NCTC 12261	47.033	100	0.47
radA	Streptococcus pneumoniae Rx1	47.033	100	0.47
radA	Streptococcus pneumoniae D39	47.033	100	0.47
radA	Streptococcus pneumoniae R6	47.033	100	0.47
radA	Streptococcus pneumoniae TIGR4	47.033	100	0.47